PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gorai.012G007000.2 | ||||||||
Common Name | B456_012G007000, LOC105779892 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 345aa MW: 38398.2 Da PI: 6.2533 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 71.4 | 2.3e-22 | 2 | 54 | 75 | 128 |
NAM 75 nratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 nrat++gyWkatgkd+ev + +++l+g+kktLvf++grap+g +t+Wvmheyrl Gorai.012G007000.2 2 NRATNQGYWKATGKDREVRH-NDQLMGMKKTLVFHNGRAPDGLRTNWVMHEYRL 54 8*******************.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 30.561 | 1 | 76 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-10 | 2 | 54 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 8.63E-27 | 2 | 77 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 345 aa Download sequence Send to blast |
MNRATNQGYW KATGKDREVR HNDQLMGMKK TLVFHNGRAP DGLRTNWVMH EYRLVEEELE 60 RIGTLQGYVL CRVFHKNNIG PPNGNRYAPF IEAEWDDGSA VLVPGIDIGD DGVASEKALV 120 ESNGVQRSGF EQEIQNADEE APANDKVRRE LLNERTYDCP PLPPGKIERL DNGPPLCLIN 180 REAPLPLIHY KRRRQNDSGP SHANISENST RTTQDHCSST TTAGTTTASP SSDTTTAVSA 240 LLEFSLMESI EPKKKKPHVP PPIYETANLD SMVPPGCMKL ITDLQNEIRK ISAERETLKL 300 EMMSAQAMIN ILQSKVDFLS KENEDLKRNN RELRGGSVGS CSHP* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-19 | 2 | 78 | 90 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-19 | 2 | 78 | 90 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-19 | 2 | 78 | 90 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-19 | 2 | 78 | 90 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-19 | 2 | 78 | 93 | 170 | NAC domain-containing protein 19 |
3swm_B | 7e-19 | 2 | 78 | 93 | 170 | NAC domain-containing protein 19 |
3swm_C | 7e-19 | 2 | 78 | 93 | 170 | NAC domain-containing protein 19 |
3swm_D | 7e-19 | 2 | 78 | 93 | 170 | NAC domain-containing protein 19 |
3swp_A | 7e-19 | 2 | 78 | 93 | 170 | NAC domain-containing protein 19 |
3swp_B | 7e-19 | 2 | 78 | 93 | 170 | NAC domain-containing protein 19 |
3swp_C | 7e-19 | 2 | 78 | 93 | 170 | NAC domain-containing protein 19 |
3swp_D | 7e-19 | 2 | 78 | 93 | 170 | NAC domain-containing protein 19 |
4dul_A | 7e-19 | 2 | 78 | 90 | 167 | NAC domain-containing protein 19 |
4dul_B | 7e-19 | 2 | 78 | 90 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in floral organs, and, at low levels, in other organs. {ECO:0000269|PubMed:25578968}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC050 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). Regulates siRNA-dependent post-transcriptional gene silencing (PTGS) through SGS3 expression modulation (PubMed:28207953). Required during pollen development (PubMed:19237690). {ECO:0000269|PubMed:19237690, ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990, ECO:0000269|PubMed:28207953}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00612 | ChIP-seq | Transfer from AT3G10490 | Download |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by type III effector proteins (TTEs) secreted by the pathogenic bacteria P.syringae pv. tomato DC3000 during basal defense. {ECO:0000269|PubMed:16553893}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KC847246 | 0.0 | KC847246.1 Gossypium hirsutum NAC domain protein NAC69 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012459323.1 | 0.0 | PREDICTED: uncharacterized protein LOC105779892 | ||||
Swissprot | Q9SQY0 | 5e-95 | NAC52_ARATH; NAC domain containing protein 52 | ||||
TrEMBL | A0A0D2RVF4 | 0.0 | A0A0D2RVF4_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A0D2UZX4 | 0.0 | A0A0D2UZX4_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.012G007000.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G10480.2 | 1e-87 | NAC domain containing protein 50 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Gorai.012G007000.2 |
Entrez Gene | 105779892 |