PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G271500.1

Common Name

B456_011G271500

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 322aa MW: 36826.6 Da PI: 5.9905

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G271500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	137.4	9.1e-43	13	142	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 ppG+rF+P+d+e++++yL++k+ g +l+ + ikev +y+++P++L + ++ +e+yfF++rd+kya+g+r+ r + +gyWkatg Gorai.011G271500.1 13 PPGYRFKPRDDEIINFYLRPKIFGLPLPP-NRIKEVFLYNYDPQTLTAmsnnaLSNGVGNEYYFFTPRDRKYANGSRPARNAGNGYWKATG 102 9***********************999.77**********8434443222245699************************* PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 dk +++ kg+++glkk+Lvfy+g+ pkg+kt+W+mhey l Gorai.011G271500.1 103 ADKLICR-KGKKIGLKKSLVFYQGKPPKGVKTNWLMHEYVL 142 *99.9999*************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.19E-52	11	168	IPR003441	NAC domain
PROSITE profile	PS51005	50.762	12	169	IPR003441	NAC domain
Pfam	PF02365	5.4E-23	13	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MEEKDEACLR SIPPGYRFKP RDDEIINFYL RPKIFGLPLP PNRIKEVFLY NYDPQTLTAM 60 SNNALSNGVG NEYYFFTPRD RKYANGSRPA RNAGNGYWKA TGADKLICRK GKKIGLKKSL 120 VFYQGKPPKG VKTNWLMHEY VLTDAPIRKR LGNEDMRLDD WVLCRVYKNP RVKKLEHETL 180 EDGNQEEADT ATTVAYDGAQ MVQQEGHQVE CEAEAARSAI PPYNGIQMVE NGIAFAPLYE 240 PINTSSQMLE NGIAFAPLYE PINVQMPQGT SFWFPEQVYS TPYFNQYGDY TFEHPTLEGF 300 NMPDCGVSDP AHFQINMQQH FS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-51	1	169	6	165	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-51	1	169	6	165	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-51	1	169	6	165	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-51	1	169	6	165	NO APICAL MERISTEM PROTEIN
3swm_A	8e-51	1	169	9	168	NAC domain-containing protein 19
3swm_B	8e-51	1	169	9	168	NAC domain-containing protein 19
3swm_C	8e-51	1	169	9	168	NAC domain-containing protein 19
3swm_D	8e-51	1	169	9	168	NAC domain-containing protein 19
3swp_A	8e-51	1	169	9	168	NAC domain-containing protein 19
3swp_B	8e-51	1	169	9	168	NAC domain-containing protein 19
3swp_C	8e-51	1	169	9	168	NAC domain-containing protein 19
3swp_D	8e-51	1	169	9	168	NAC domain-containing protein 19
4dul_A	7e-51	1	169	6	165	NAC domain-containing protein 19
4dul_B	7e-51	1	169	6	165	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC847249	0.0	KC847249.1 Gossypium hirsutum NAC domain protein NAC72 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022764266.1	3e-79	NAC transcription factor 29-like
TrEMBL	A0A0D2UYJ6	0.0	A0A0D2UYJ6_GOSRA; Uncharacterized protein (Fragment)
TrEMBL	A0A2P5RIC6	0.0	A0A2P5RIC6_GOSBA; Uncharacterized protein
STRING	Gorai.011G271500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM28853	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	5e-54	NAC-like, activated by AP3/PI

Link Out ? help Back to Top
Phytozome	Gorai.011G271500.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]