PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G238800.1

Common Name

B456_011G238800, LOC105776947

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GATA

Protein Properties

Length: 338aa MW: 36797.1 Da PI: 6.7839

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G238800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	55.1	1e-17	252	285	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C +C tkTp+WR gp g+ktLCnaCG++y++ + Gorai.011G238800.1 252 CMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 285 99*****************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF016992	3.8E-76	2	333	IPR016679	Transcription factor, GATA, plant
SMART	SM00401	5.1E-17	246	296	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	11.279	246	282	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	9.6E-15	250	283	IPR013088	Zinc finger, NHR/GATA-type
SuperFamily	SSF57716	4.56E-15	250	309	No hit	No description
CDD	cd00202	3.16E-14	251	308	No hit	No description
PROSITE pattern	PS00344	0	252	277	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	2.3E-15	252	285	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm
GO:0009845	Biological Process	seed germination
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MIGPTNFIDE IDCGSFFDHI DDLLDFPNED VEAGFSAPDS AVNAAAFPSI WTAHPESFPG 60 SDSVFSNNSA SDLSAELSVP YEDIVQLEWL SNFVEDSNCG ASLTIKKQEP NSNNKDSPSH 120 HDHDHHQFQT SSPVSVLESS SSYSGEKPVA APGKCGRARS KRPRPATFNP RPAIQLISPS 180 SSVNDNDVPQ SLFVPKVPSD SENHAESRLL IKLPRQVNPE HKKKKKIKLT LPAAAAPPTD 240 NNTTQNPSVR KCMHCEITKT PQWRAGPMGP KTLCNACGVR YKSGRLFPEY RPAASPTFIP 300 SVHSNSHKKV LEMRTKCGTA DAPEMIPNKS NPALDYI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	160	164	KRPRP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012455387.1	0.0	PREDICTED: GATA transcription factor 8-like
TrEMBL	A0A0D2UXE7	0.0	A0A0D2UXE7_GOSRA; GATA transcription factor
STRING	Gorai.011G238800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4975	27	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54810.2	2e-40	GATA family protein

Link Out ? help Back to Top
Phytozome	Gorai.011G238800.1
Entrez Gene	105776947

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]