PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G224000.1

Common Name

B456_011G224000, LOC105776592

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

FAR1

Protein Properties

Length: 859aa MW: 96564.5 Da PI: 6.8382

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G224000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	47.3	6.8e-15	66	140	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+ YA+++GFs+ + + +++k +g i++ +f Cs+e ++++ ++ C+a++++++++ +kw+ tk++++HnH+++ Gorai.011G224000.1 66 FYDGYARRLGFSTHVGQFTRTKLDGPIVTWDFACSREVLKRKNVES--------------CNAMFRIERKDGKKWVATKFVEDHNHSMV 140 9************************************9998877..............************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.4E-12	66	140	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.1E-31	271	363	IPR018289	MULE transposase domain
Pfam	PF04434	7.4E-12	548	582	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	11.214	548	584	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.6E-8	559	586	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 859 aa Download sequence Send to blast
MDVGGGKGDN VRGVNIESSK GGGSSGNLIE NLTGIDVVVN PNDDGGAGGK PCVGMEFESE 60 DAGRTFYDGY ARRLGFSTHV GQFTRTKLDG PIVTWDFACS REVLKRKNVE SCNAMFRIER 120 KDGKKWVATK FVEDHNHSMV NPSKVHYLRP RRHFAGVTKN VPETSDAATD VWALVDGNHV 180 SCEATRVGNT SCVDPNHLVR NMGSVGYVGL PSQRRTLGKD AQNLLNYFKK LQAENPGFYY 240 AIQLDDDNRM TNVFWADARS RAAYNHFGDA VIFDTMYRPN QYQIPFAPFT GINHHGQMVL 300 FGCALLLDES ESSFTWLFRT WLSAMNNRCP VSITTDQDRA IQAAVSQVFP ETRHCICKWH 360 ILREGQERLA HIYLAHPSLY GEIYGCINFS ETIEDFESSW TTLLDKYNLQ KNEWLLAVYN 420 ARKQWAPVYF RGTFFAILSS NQGVSSFFDG YINQQTTIPL FLKQYERALE CSLEKEIEAD 480 CDTICTTPEL KTPSPMEQQA ANLYTKKVFS KFQEELVETF VYTANKIEGD GIVSKYRVAK 540 YEHDDKAYFV MLNVSEMKAS CTCQMFEYSG ILCRHILTVF TVTNVLTLPS HYILRRWTKS 600 AKSWVGLDEK NADPQGVETL TARFNILCQE AFKLAEEGSV VPETYSAAIN ALRDAVKKVA 660 FIKKDVAKVT PPRSYINGNS HEDGSKKTTS PVSEMVPSLW PWQDVVSPRF NLIDSGAPLT 720 DLNQPSMAPV SIDRETDHLD STVVLSCFKS MTWVIENKKE VEACKVAVIN LKLHDYSKNP 780 LGEAEVQFSL TKVTLEPMLR SMAYISQQLS TPVNRVAAIN LKLQDTKTTS GEKEVKFQVS 840 KDTLGSMLRS MAYIREQL*

Sequence ? help Back to Top

Protein Sequence Length: 859 aa Download sequence Send to blast

MDVGGGKGDN VRGVNIESSK GGGSSGNLIE NLTGIDVVVN PNDDGGAGGK PCVGMEFESE  60
DAGRTFYDGY ARRLGFSTHV GQFTRTKLDG PIVTWDFACS REVLKRKNVE SCNAMFRIER  120
KDGKKWVATK FVEDHNHSMV NPSKVHYLRP RRHFAGVTKN VPETSDAATD VWALVDGNHV  180
SCEATRVGNT SCVDPNHLVR NMGSVGYVGL PSQRRTLGKD AQNLLNYFKK LQAENPGFYY  240
AIQLDDDNRM TNVFWADARS RAAYNHFGDA VIFDTMYRPN QYQIPFAPFT GINHHGQMVL  300
FGCALLLDES ESSFTWLFRT WLSAMNNRCP VSITTDQDRA IQAAVSQVFP ETRHCICKWH  360
ILREGQERLA HIYLAHPSLY GEIYGCINFS ETIEDFESSW TTLLDKYNLQ KNEWLLAVYN  420
ARKQWAPVYF RGTFFAILSS NQGVSSFFDG YINQQTTIPL FLKQYERALE CSLEKEIEAD  480
CDTICTTPEL KTPSPMEQQA ANLYTKKVFS KFQEELVETF VYTANKIEGD GIVSKYRVAK  540
YEHDDKAYFV MLNVSEMKAS CTCQMFEYSG ILCRHILTVF TVTNVLTLPS HYILRRWTKS  600
AKSWVGLDEK NADPQGVETL TARFNILCQE AFKLAEEGSV VPETYSAAIN ALRDAVKKVA  660
FIKKDVAKVT PPRSYINGNS HEDGSKKTTS PVSEMVPSLW PWQDVVSPRF NLIDSGAPLT  720
DLNQPSMAPV SIDRETDHLD STVVLSCFKS MTWVIENKKE VEACKVAVIN LKLHDYSKNP  780
LGEAEVQFSL TKVTLEPMLR SMAYISQQLS TPVNRVAAIN LKLQDTKTTS GEKEVKFQVS  840
KDTLGSMLRS MAYIREQL*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC243076	0.0	AC243076.1 Gossypium arboreum clone GAH047E15-jmp, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012454779.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
Refseq	XP_012454780.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
Refseq	XP_012454781.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A0D2TBX2	0.0	A0A0D2TBX2_GOSRA; Uncharacterized protein
STRING	Gorai.011G224000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Link Out ? help Back to Top
Phytozome	Gorai.011G224000.1
Entrez Gene	105776592

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]