PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G221900.1

Common Name

B456_011G221900, LOC105775590

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 255aa MW: 27751 Da PI: 8.8227

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G221900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.3	5.7e-05	85	107	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+++Fs++ L H++ H Gorai.011G221900.1 85 FSCNFCKRVFSTSQALGGHQNAH 107 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	9.76E-7	82	112	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.1E-4	83	111	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	1.6E-5	84	109	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.531	85	112	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	87	107	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MVIILEDPSE VVSTKSADMA GSVPQQKPSS VVLDLKLSNH DDDGDDNGGA KLRRESKIEL 60 DLFTPRNPTN SSQHDGDHHD KSKVFSCNFC KRVFSTSQAL GGHQNAHKQE RALAKRRHQG 120 LMEVNPSRTF GTPNFPYYPF STFPSIPFQG SYNRSPLSVR YESMVRKPTH PWPSMPSSLS 180 QPYHVPHGWS SSRQALMSLI QPNLSFNNGG LGIPGASTSA TLGLGQANVA MNRVSEGSDN 240 QCKDGAGMDL SLKL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012453548.1	0.0	PREDICTED: zinc finger protein 1-like
TrEMBL	A0A0D2VQ88	0.0	A0A0D2VQ88_GOSRA; Uncharacterized protein
STRING	Gorai.011G221900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM20134	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80730.1	3e-19	zinc-finger protein 1

Link Out ? help Back to Top
Phytozome	Gorai.011G221900.1
Entrez Gene	105775590

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]