PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G216400.1

Common Name

B456_011G216400, LOC105777244

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 373aa MW: 40798.3 Da PI: 10.0345

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G216400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	51.2	3.3e-16	50	133	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ v L+ea+++++ +r+klk+++We+v++++ ++ ++++qCk+k+e+++kry+ + +++++ s++p++ +l+ Gorai.011G216400.1 50 EWSEGAVSSLLEAYENKWVLRNRAKLKGHDWEDVARYVsaraNCTKSPKTQTQCKNKIESMKKRYRSESATAEG------SSWPLYPRLD 133 5***********************************844444455556679**************99997......4699999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.3E-19	48	133	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MDKETNNQEN PSLLSNNNTN KEDCSPKKHP GSSTVTGGGG GSNDRLKRDE WSEGAVSSLL 60 EAYENKWVLR NRAKLKGHDW EDVARYVSAR ANCTKSPKTQ TQCKNKIESM KKRYRSESAT 120 AEGSSWPLYP RLDLLLRGNA AAAAAAAAPS PPPSLPLPPP PQQLHLSAVV QPQPPGPLFT 180 NLPLTLPEAS TLVVLQQQQQ PPPPPLPPAA PPPALAPQGL GTAQNSHGSN GFEKIPKDDG 240 AGTKVSDHLS DKVAIETDSS TPGLYSDKEK LRSKKLKMKT MENKKKKRRK KEEYREIGES 300 IRILAEVVLK SEESRMETLR EIEKMRIEAE TKRGEMELKR TEIIANTQLE IAKLFAGSSN 360 KGIDPSLRIG RS*

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MDKETNNQEN PSLLSNNNTN KEDCSPKKHP GSSTVTGGGG GSNDRLKRDE WSEGAVSSLL  60
EAYENKWVLR NRAKLKGHDW EDVARYVSAR ANCTKSPKTQ TQCKNKIESM KKRYRSESAT  120
AEGSSWPLYP RLDLLLRGNA AAAAAAAAPS PPPSLPLPPP PQQLHLSAVV QPQPPGPLFT  180
NLPLTLPEAS TLVVLQQQQQ PPPPPLPPAA PPPALAPQGL GTAQNSHGSN GFEKIPKDDG  240
AGTKVSDHLS DKVAIETDSS TPGLYSDKEK LRSKKLKMKT MENKKKKRRK KEEYREIGES  300
IRILAEVVLK SEESRMETLR EIEKMRIEAE TKRGEMELKR TEIIANTQLE IAKLFAGSSN  360
KGIDPSLRIG RS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	283	288	KKKKRR
2	283	290	KKKKRRKK
3	284	288	KKKRR
4	284	289	KKKRRK
5	284	290	KKKRRKK
6	285	289	KKRRK
7	285	290	KKRRKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX964236	1e-114	JX964236.1 Gossypium hirsutum clone NBRI_TRANS-505 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012455847.1	0.0	PREDICTED: trihelix transcription factor ASIL2-like
TrEMBL	A0A0D2UWK6	0.0	A0A0D2UWK6_GOSRA; Uncharacterized protein
STRING	Gorai.011G216400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9859	25	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	1e-92	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Gorai.011G216400.1
Entrez Gene	105777244

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]