PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G196400.4
Common NameB456_011G196400, LOC105776456
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARR-B
Protein Properties Length: 593aa    MW: 65051.8 Da    PI: 6.414
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G196400.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like826.5e-26126178155
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         kpr++W+ eLH++Fv av+qL G++ ++Pk+ilelm+v+gLt+e+v+SHLQkYRl
  Gorai.011G196400.4 126 KPRVVWSVELHQQFVAAVNQL-GID-TVPKKILELMNVPGLTRENVASHLQKYRL 178
                         79*******************.888.8***************************8 PP
2Response_reg32.25.6e-1215653109
                         CTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
        Response_reg  53 mpgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                         mp+mdG++ll++i  e  +lp+i+++a + ++ + + +  Ga d+l Kp+ +e+l +
  Gorai.011G196400.4   1 MPDMDGFKLLEHIGLEM-DLPVIMMSADDGKQVVMKGVTHGACDYLIKPVRIEALKN 56 
                         9************6654.8**********************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF000726.1E-9156IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521728.97E-16170IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.1E-20187No hitNo description
CDDcd001565.56E-12161No hitNo description
PROSITE profilePS5011024.433162IPR001789Signal transduction response regulator, receiver domain
PIRSFPIRSF0363921.9E-1291584IPR017053Response regulator B-type, plant
SuperFamilySSF466895.02E-18123182IPR009057Homeodomain-like
PROSITE profilePS5129410.283123181IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-27125183IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-22126178IPR006447Myb domain, plants
PfamPF002496.3E-8128177IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MPDMDGFKLL EHIGLEMDLP VIMMSADDGK QVVMKGVTHG ACDYLIKPVR IEALKNIWQH  60
VVRKRKNEWK EFEQSGSVEE GDRQPKQSDD ADYSSSANEG NWKGSKRRKD EEEETDERDD  120
TSTLKKPRVV WSVELHQQFV AAVNQLGIDT VPKKILELMN VPGLTRENVA SHLQKYRLYL  180
RRLSGVSQHQ SNLSTIISAQ DPTFGSLSSL SGLDLQTLAA TGQLPAQSLA RLQAAGLGRA  240
TAKSGIPITL VDQRNIFSFE NPKLRFGEGQ QQHMTNKQQV NLLHGIPTTM EAKQLVSLRH  300
AAQSVGNMNM QVPPPGPQSS QNNPLLMQMG QQQQQQQSRG QILVDSTINH APRLSSMGQP  360
ILSNGMATNV SSRNGIPENI RAPGYSQTPS MLNFPMNHAS ELPGNCFPLG STPGVSNLTS  420
KGAFQEDVNS EIKGSGGFMP SYDVFNDLNQ HKPQSWELQN VGIAFDSSQH SNSLQGNLDL  480
TQSALGQQGF SSGQMNGHNR SAAVASKAVF STGDVKELRS AQNVNQHLNN LLVDNTIRVK  540
SERVCDTSPA NIFPDHFGQD DLMSALLKQQ ESVASSENEF DFDGYSMNNI PV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-19125184464ARR10-B
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Detected in the whole plant. Predominantly expressed in pollen. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:15173562, ECO:0000269|PubMed:9891419}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3934659e-85GQ393465.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS0430 SSR marker CGR5416 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012454565.10.0PREDICTED: two-component response regulator ARR2-like isoform X2
SwissprotQ9ZWJ91e-171ARR2_ARATH; Two-component response regulator ARR2
TrEMBLA0A0D2TAL10.0A0A0D2TAL1_GOSRA; Two-component response regulator
STRINGGorai.011G196400.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.21e-137response regulator 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Takahashi N, et al.
    Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots.
    Curr. Biol., 2013. 23(18): p. 1812-7
    [PMID:24035544]
  3. Ge XM, et al.
    Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis.
    Plant J., 2015. 82(1): p. 138-50
    [PMID:25704455]
  4. Takahashi N,Umeda M
    Cytokinins promote onset of endoreplication by controlling cell cycle machinery.
    Plant Signal Behav, 2014. 9(8): p. e29396
    [PMID:25763620]
  5. Kobayashi K, et al.
    Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling.
    Plant Physiol., 2017. 173(4): p. 2340-2355
    [PMID:28193764]
  6. Arnaud D, et al.
    Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(3): p. 543-559
    [PMID:28254779]
  7. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  8. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  9. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  10. Takatsuka H,Higaki T,Umeda M
    Actin Reorganization Triggers Rapid Cell Elongation in Roots.
    Plant Physiol., 2018. 178(3): p. 1130-1141
    [PMID:30185441]