PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G195800.4

Common Name

B456_011G195800

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

FAR1

Protein Properties

Length: 734aa MW: 83597.3 Da PI: 6.4716

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G195800.4	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	45.4	2.7e-14	61	129	25	90
FAR1 25 ngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 + +t+r+f+C + g+++ + +++ k +r+r+++r+gC+a +++ k+ +w+vt +++ HnHel Gorai.011G195800.4 61 GRGVTRRDFTCHRGGYPQMKLSEDGKMQRNRKSSRCGCRAYMRIVKRAdfnVPEWRVTAFSNIHNHELL 129 45699****************9***************98887676789***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.2E-11	62	129	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.4E-19	252	343	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.705	516	564	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	5.5E-7	536	562	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	9.4E-6	539	566	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 734 aa Download sequence Send to blast
MSEGTSMAME SSENGTDLSQ DDNGTIVEMP EDTILSQQTS VNLVPFIGQR RHRTRGKDGI 60 GRGVTRRDFT CHRGGYPQMK LSEDGKMQRN RKSSRCGCRA YMRIVKRADF NVPEWRVTAF 120 SNIHNHELLK ANEVCLLPAY CTITPDDKAR ICMFAKAGMS VRQMLRLMEL EKGIKLGCLP 180 FTEIDVRNLL QSFRNVNRDN DPIDLIAMCK KLKDENPNFQ YDFKLDGHNR LEHIAWTYAS 240 SVQLYVSFGD AVVFDTTHRL DAYDMLLGVW VGVDNHGMTT FFGCVLLRDE NIQSFSWGLK 300 TFLGFMKGKA PQTLLTDQNM WLKEAIAIEM PETKHAFSIC HIISKFSDWF SVLLGSRYDD 360 WKSDFYRLYS LELLEEFEEE WREMIDKYGL HDNKHIISLY ALRTFWALPF LRPYFFAGLT 420 SLCQSETTTT FIQRILSAQS RLDRFVEQVA EVVEFNDRAG SKQKQPRKSQ KVCLKTGSPI 480 ESHAATVLTP YAFGKLQEEL LLAPQYASFV VDEGCFEVKH HTQMDGGCKV ICVLCEEQIS 540 CSCHHFEFSG ILCRHVLRVL SSNNCFHIPD PYLPSRWRLN SSSSINPLSN AMREHSEKIQ 600 LLESLTSALI AESIETKERL DVACEQTAMV LSHIKDLPRT TQSANGIVYN CPSDLILPEV 660 EDTDGIVQSF TMGTSHEPLT SGKLKDRRPR DGIDITRKRR HYSDSCCGHF EHDSSDCPMM 720 EGDNLNGDAL GYI*

Sequence ? help Back to Top

Protein Sequence Length: 734 aa Download sequence Send to blast

MSEGTSMAME SSENGTDLSQ DDNGTIVEMP EDTILSQQTS VNLVPFIGQR RHRTRGKDGI  60
GRGVTRRDFT CHRGGYPQMK LSEDGKMQRN RKSSRCGCRA YMRIVKRADF NVPEWRVTAF  120
SNIHNHELLK ANEVCLLPAY CTITPDDKAR ICMFAKAGMS VRQMLRLMEL EKGIKLGCLP  180
FTEIDVRNLL QSFRNVNRDN DPIDLIAMCK KLKDENPNFQ YDFKLDGHNR LEHIAWTYAS  240
SVQLYVSFGD AVVFDTTHRL DAYDMLLGVW VGVDNHGMTT FFGCVLLRDE NIQSFSWGLK  300
TFLGFMKGKA PQTLLTDQNM WLKEAIAIEM PETKHAFSIC HIISKFSDWF SVLLGSRYDD  360
WKSDFYRLYS LELLEEFEEE WREMIDKYGL HDNKHIISLY ALRTFWALPF LRPYFFAGLT  420
SLCQSETTTT FIQRILSAQS RLDRFVEQVA EVVEFNDRAG SKQKQPRKSQ KVCLKTGSPI  480
ESHAATVLTP YAFGKLQEEL LLAPQYASFV VDEGCFEVKH HTQMDGGCKV ICVLCEEQIS  540
CSCHHFEFSG ILCRHVLRVL SSNNCFHIPD PYLPSRWRLN SSSSINPLSN AMREHSEKIQ  600
LLESLTSALI AESIETKERL DVACEQTAMV LSHIKDLPRT TQSANGIVYN CPSDLILPEV  660
EDTDGIVQSF TMGTSHEPLT SGKLKDRRPR DGIDITRKRR HYSDSCCGHF EHDSSDCPMM  720
EGDNLNGDAL GYI*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012454703.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 11-like isoform X1
Refseq	XP_012454704.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 11-like isoform X1
Refseq	XP_012454705.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 11-like isoform X1
Refseq	XP_012454706.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 11-like isoform X1
Refseq	XP_012454707.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 11-like isoform X1
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A0D2SZ35	0.0	A0A0D2SZ35_GOSRA; Uncharacterized protein
STRING	Gorai.011G195800.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Link Out ? help Back to Top
Phytozome	Gorai.011G195800.4

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]