PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G195800.2

Common Name

B456_011G195800, LOC105776543

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

FAR1

Protein Properties

Length: 757aa MW: 86247.2 Da PI: 6.4708

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G195800.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.7	2.5e-20	59	152	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnH 87 +fY+++Ak++GFs+r+++++ + + +t+r+f+C + g+++ + +++ k +r+r+++r+gC+a +++ k+ +w+vt +++ HnH Gorai.011G195800.2 59 EFYCSFAKQCGFSIRRHRTRGKdGIGRGVTRRDFTCHRGGYPQMKLSEDGKMQRNRKSSRCGCRAYMRIVKRAdfnVPEWRVTAFSNIHNH 149 6*************999877456677****************9***************98887676789********** PP FAR1 88 ela 90 el Gorai.011G195800.2 150 ELL 152 *96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.3E-17	59	152	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.5E-19	275	366	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.705	539	587	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	5.7E-7	559	585	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	9.4E-6	562	589	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 757 aa Download sequence Send to blast
MSEGTSMAME SSENGTDLSQ DDNGTIVEMP EDTILSQQTS VNLVPFIGQR FVSQDAAYEF 60 YCSFAKQCGF SIRRHRTRGK DGIGRGVTRR DFTCHRGGYP QMKLSEDGKM QRNRKSSRCG 120 CRAYMRIVKR ADFNVPEWRV TAFSNIHNHE LLKANEVCLL PAYCTITPDD KARICMFAKA 180 GMSVRQMLRL MELEKGIKLG CLPFTEIDVR NLLQSFRNVN RDNDPIDLIA MCKKLKDENP 240 NFQYDFKLDG HNRLEHIAWT YASSVQLYVS FGDAVVFDTT HRLDAYDMLL GVWVGVDNHG 300 MTTFFGCVLL RDENIQSFSW GLKTFLGFMK GKAPQTLLTD QNMWLKEAIA IEMPETKHAF 360 SICHIISKFS DWFSVLLGSR YDDWKSDFYR LYSLELLEEF EEEWREMIDK YGLHDNKHII 420 SLYALRTFWA LPFLRPYFFA GLTSLCQSET TTTFIQRILS AQSRLDRFVE QVAEVVEFND 480 RAGSKQKQPR KSQKVCLKTG SPIESHAATV LTPYAFGKLQ EELLLAPQYA SFVVDEGCFE 540 VKHHTQMDGG CKVICVLCEE QISCSCHHFE FSGILCRHVL RVLSSNNCFH IPDPYLPSRW 600 RLNSSSSINP LSNAMREHSE KIQLLESLTS ALIAESIETK ERLDVACEQT AMVLSHIKDL 660 PRTTQSANGI VYNCPSDLIL PEVEDTDGIV QSFTMGTSHE PLTSGKLKDR RPRDGIDITR 720 KRRHYSDSCC GHFEHDSSDC PMMEGDNLNG DALGYI*

Sequence ? help Back to Top

Protein Sequence Length: 757 aa Download sequence Send to blast

MSEGTSMAME SSENGTDLSQ DDNGTIVEMP EDTILSQQTS VNLVPFIGQR FVSQDAAYEF  60
YCSFAKQCGF SIRRHRTRGK DGIGRGVTRR DFTCHRGGYP QMKLSEDGKM QRNRKSSRCG  120
CRAYMRIVKR ADFNVPEWRV TAFSNIHNHE LLKANEVCLL PAYCTITPDD KARICMFAKA  180
GMSVRQMLRL MELEKGIKLG CLPFTEIDVR NLLQSFRNVN RDNDPIDLIA MCKKLKDENP  240
NFQYDFKLDG HNRLEHIAWT YASSVQLYVS FGDAVVFDTT HRLDAYDMLL GVWVGVDNHG  300
MTTFFGCVLL RDENIQSFSW GLKTFLGFMK GKAPQTLLTD QNMWLKEAIA IEMPETKHAF  360
SICHIISKFS DWFSVLLGSR YDDWKSDFYR LYSLELLEEF EEEWREMIDK YGLHDNKHII  420
SLYALRTFWA LPFLRPYFFA GLTSLCQSET TTTFIQRILS AQSRLDRFVE QVAEVVEFND  480
RAGSKQKQPR KSQKVCLKTG SPIESHAATV LTPYAFGKLQ EELLLAPQYA SFVVDEGCFE  540
VKHHTQMDGG CKVICVLCEE QISCSCHHFE FSGILCRHVL RVLSSNNCFH IPDPYLPSRW  600
RLNSSSSINP LSNAMREHSE KIQLLESLTS ALIAESIETK ERLDVACEQT AMVLSHIKDL  660
PRTTQSANGI VYNCPSDLIL PEVEDTDGIV QSFTMGTSHE PLTSGKLKDR RPRDGIDITR  720
KRRHYSDSCC GHFEHDSSDC PMMEGDNLNG DALGYI*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012454703.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 11-like isoform X1
Refseq	XP_012454704.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 11-like isoform X1
Refseq	XP_012454705.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 11-like isoform X1
Refseq	XP_012454706.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 11-like isoform X1
Refseq	XP_012454707.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 11-like isoform X1
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A0D2RDZ8	0.0	A0A0D2RDZ8_GOSRA; Uncharacterized protein
STRING	Gorai.011G195800.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Link Out ? help Back to Top
Phytozome	Gorai.011G195800.2
Entrez Gene	105776543

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]