PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G158800.1

Common Name

B456_011G158800

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

M-type_MADS

Protein Properties

Length: 113aa MW: 13037 Da PI: 10.0482

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G158800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	36.3	7.3e-12	17	66	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 k ien+ r ++fskR + i KK + LS+L + e++ iifs+t k y ++ Gorai.011G158800.1 17 KIIENEDDRLISFSKRCTIIYKKTSKLSTLFGGEILFIIFSPTSKPYSFC 66 579******************************************99997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	18.628	9	69	IPR002100	Transcription factor, MADS-box
SMART	SM00432	7.0E-14	9	68	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.92E-20	10	92	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.6E-11	11	31	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.3E-14	19	65	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.6E-11	31	46	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.6E-11	46	67	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 113 aa Download sequence Send to blast
MASSGKKNWG RRKIEIKIIE NEDDRLISFS KRCTIIYKKT SKLSTLFGGE ILFIIFSPTS 60 KPYSFCHPSI ESVVKRFWNP NQPHNETTHA PIEAYPKARI NLLVRDFNEL HD*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012483076.1	2e-49	PREDICTED: agamous-like MADS-box protein AGL62
TrEMBL	A0A0D2VFZ6	2e-77	A0A0D2VFZ6_GOSRA; Uncharacterized protein
STRING	Gorai.011G158800.1	3e-78	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM86	28	390

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04100.1	8e-21	AGAMOUS-like 57

Link Out ? help Back to Top
Phytozome	Gorai.011G158800.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]