PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G157500.1
Common NameB456_011G157500, LOC105778241
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 409aa    MW: 45306.9 Da    PI: 8.8433
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G157500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.44.8e-20242291356
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         ++GVr+++ +g+WvAeIr p++   r+r++lg+f+taeeAa a++ a+  l+ge
  Gorai.011G157500.1 242 FRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEEAAMAYDTAAYMLRGE 291
                         8******9.**********955...5*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.88E-32240300No hitNo description
SMARTSM003802.8E-36241304IPR001471AP2/ERF domain
PROSITE profilePS5103222.682241298IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-23241299IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.0E-32241299IPR001471AP2/ERF domain
PfamPF008476.5E-14242291IPR001471AP2/ERF domain
PRINTSPR003676.4E-11242253IPR001471AP2/ERF domain
PRINTSPR003676.4E-11264280IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MSVENQFPKT ETLMNKEWPS YIYGTPTGPI IWGALSKSPP SSSSSSPSPD RLNSSSSPEE  60
SLEANLLKNI PGILRQDILN EHHSSLFVSG FSSVPPHGGL VSEVKDGFMP LNFLETFPKL  120
NQAQVSEPPS PSTTSKFPNL NLFLQEPGML DPSRRAIGSM GKKGEPGSTL CQNSSFQMPQ  180
IGQVQSQMGD EWLRMNQSLT SYQSKGFSDY WLSTTKTQPM KYTGRRLQNQ HQKGSSSPGK  240
LFRGVRQRHW GKWVAEIRLP RNRTRVWLGT FDTAEEAAMA YDTAAYMLRG EYAHLNFPDL  300
KHQLKANSLN GNTAALLEAK LQAISQGIAG NKKSNDPSLT SAKVQDLNQN TEKREWQFEV  360
KNKAVSEVNE ISKKTQESVS SDVDAVQLSR MPSLDMDMIW DALSVSDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-20237298163ATERF1
3gcc_A6e-20237298163ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012457356.10.0PREDICTED: ethylene-responsive transcription factor ERF062-like
TrEMBLA0A0D2RN390.0A0A0D2RN39_GOSRA; Uncharacterized protein
STRINGGorai.011G157500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107992534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.11e-68ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]