PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.011G111500.2 | ||||||||
Common Name | B456_011G111500, LOC105777164 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 249aa MW: 27417.1 Da PI: 4.4561 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.5 | 2.7e-19 | 23 | 76 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ +q+++Le+ Fe ++++ +++ +LA++lgL+ rqV vWFqNrRa++k Gorai.011G111500.2 23 KKRRLSVDQVKALEKNFEVENKLEPDRKSKLAQELGLQPRQVAVWFQNRRARWK 76 4568999**********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 128.3 | 3.2e-41 | 23 | 114 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kkrrls +qvk+LE++Fe e+kLep+rK++la+eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk++y++lk + ++L++e+e+L ++++ Gorai.011G111500.2 23 KKRRLSVDQVKALEKNFEVENKLEPDRKSKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKTSYESLKLNYNNLRHENEDLLKQIS 113 9**************************************************************************************9997 PP HD-ZIP_I/II 93 e 93 e Gorai.011G111500.2 114 E 114 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.908 | 18 | 78 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.55E-19 | 20 | 80 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 5.3E-18 | 21 | 82 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.1E-16 | 23 | 76 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.52E-17 | 23 | 79 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-20 | 25 | 85 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 3.7E-6 | 49 | 58 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 53 | 76 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.7E-6 | 58 | 74 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.1E-16 | 78 | 119 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MLEGFDEEGC FEELTVGHGG GAKKRRLSVD QVKALEKNFE VENKLEPDRK SKLAQELGLQ 60 PRQVAVWFQN RRARWKTKQL ERDYGVLKTS YESLKLNYNN LRHENEDLLK QISELKAKLI 120 QPPGSSLGTS SEPAEVNCES FNDGGGNGSV GGGGDTVFPD LKDGSSDSDS SAILNEENNS 180 GGDMEGGSPN NGAASSPSSM NNCFQLFKTT YQTPQYVKME EHDFISSTAD EVCNFFSDEQ 240 APSLQWWI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 70 | 78 | RRARWKTKQ |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed with a lower level in siliques. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function as a negative regulator of the flowering time response to photoperiod. May act to repress cell expansion during plant development. {ECO:0000269|PubMed:14623244}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX964398 | 2e-56 | JX964398.1 Gossypium hirsutum clone NBRI_TRANS-667 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012455721.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-6-like | ||||
Swissprot | Q940J1 | 1e-62 | ATB16_ARATH; Homeobox-leucine zipper protein ATHB-16 | ||||
TrEMBL | A0A0D2RKK5 | 0.0 | A0A0D2RKK5_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.011G111500.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G40060.1 | 4e-53 | homeobox protein 16 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.011G111500.2 |
Entrez Gene | 105777164 |
Publications ? help Back to Top | |||
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