PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G111500.1

Common Name

B456_011G111500, LOC105777164

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HD-ZIP

Protein Properties

Length: 287aa MW: 31684.8 Da PI: 4.563

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G111500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.1	3.4e-19	61	114	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ +q+++Le+ Fe ++++ +++ +LA++lgL+ rqV vWFqNrRa++k Gorai.011G111500.1 61 KKRRLSVDQVKALEKNFEVENKLEPDRKSKLAQELGLQPRQVAVWFQNRRARWK 114 4558999**********************************************9 PP
2	HD-ZIP_I/II	127.9	4.3e-41	61	152	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kkrrls +qvk+LE++Fe e+kLep+rK++la+eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk++y++lk + ++L++e+e+L ++++ Gorai.011G111500.1 61 KKRRLSVDQVKALEKNFEVENKLEPDRKSKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKTSYESLKLNYNNLRHENEDLLKQIS 151 9**************************************************************************************9997 PP HD-ZIP_I/II 93 e 93 e Gorai.011G111500.1 152 E 152 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.908	56	116	IPR001356	Homeobox domain
SuperFamily	SSF46689	8.98E-19	57	118	IPR009057	Homeodomain-like
SMART	SM00389	5.3E-18	59	120	IPR001356	Homeobox domain
CDD	cd00086	3.98E-17	61	117	No hit	No description
Pfam	PF00046	2.7E-16	61	114	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.6E-20	63	123	IPR009057	Homeodomain-like
PRINTS	PR00031	4.6E-6	87	96	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	91	114	IPR017970	Homeobox, conserved site
PRINTS	PR00031	4.6E-6	96	112	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.4E-16	116	157	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MKRLGSSDSL SALMSICPTS DEHSPRNNNN VYIREFQSML EGFDEEGCFE ELTVGHGGGA 60 KKRRLSVDQV KALEKNFEVE NKLEPDRKSK LAQELGLQPR QVAVWFQNRR ARWKTKQLER 120 DYGVLKTSYE SLKLNYNNLR HENEDLLKQI SELKAKLIQP PGSSLGTSSE PAEVNCESFN 180 DGGGNGSVGG GGDTVFPDLK DGSSDSDSSA ILNEENNSGG DMEGGSPNNG AASSPSSMNN 240 CFQLFKTTYQ TPQYVKMEEH DFISSTADEV CNFFSDEQAP SLQWWI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	108	116	RRARWKTKQ

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Widely expressed with a lower level in siliques. {ECO:0000269\|PubMed:16055682}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function as a negative regulator of the flowering time response to photoperiod. May act to repress cell expansion during plant development. {ECO:0000269\|PubMed:14623244}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX964398	2e-56	JX964398.1 Gossypium hirsutum clone NBRI_TRANS-667 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012455721.1	0.0	PREDICTED: homeobox-leucine zipper protein ATHB-6-like
Swissprot	Q940J1	1e-71	ATB16_ARATH; Homeobox-leucine zipper protein ATHB-16
TrEMBL	A0A0D2RKK5	0.0	A0A0D2RKK5_GOSRA; Uncharacterized protein
STRING	Gorai.011G111500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM545	28	143

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22430.1	2e-66	homeobox protein 6

Link Out ? help Back to Top
Phytozome	Gorai.011G111500.1
Entrez Gene	105777164

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]