PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G104600.2

Common Name

B456_011G104600, LOC105776230

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

LBD

Protein Properties

Length: 305aa MW: 33178.2 Da PI: 7.387

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G104600.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	140.4	5.9e-44	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk+lrrkC+++Cv+apyfp ++p+kfanvhk+FGasnv kll++l++++reda++sl+yeAear+rdPvyG+vg+i+ lq++l+q++ Gorai.011G104600.2 7 PCAACKFLRRKCTQECVFAPYFPPDNPQKFANVHKVFGASNVAKLLNELNTSQREDAVNSLAYEAEARLRDPVYGCVGLISILQHKLKQMQ 97 7**************************************************************************************** PP DUF260 92 aelallkee 100 ++l+ +k+e Gorai.011G104600.2 98 HDLNNAKKE 106 **99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.087	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.5E-43	7	104	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MSSSNSPCAA CKFLRRKCTQ ECVFAPYFPP DNPQKFANVH KVFGASNVAK LLNELNTSQR 60 EDAVNSLAYE AEARLRDPVY GCVGLISILQ HKLKQMQHDL NNAKKELSTY IGPQAMLPIL 120 QPSVFLQQHV GNPSSSSSSS AVMQHNMMPM MGIPTAAAAA SGQLVLREPQ QQQIFEAQQQ 180 LAAVIAAREQ QEMFRGYEQH HGGQQPEIVR FNNGFDGSAS VTATGFNQIT TAAAAATMSP 240 SLALGSFENP YQIQAQQDHH HCHGGHHPLQ AQLLLQPQQG QPQNQQQQPQ RSGSEEARSI 300 GPSS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-51	4	124	8	129	LOB family transfactor Ramosa2.1
5ly0_B	6e-51	4	124	8	129	LOB family transfactor Ramosa2.1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in trichomes, at the base of many lateral organs, including branching points of the inflorescence and floral organs and in the distal part of the pistil at stages when style and stigma start to develop. Also detected in pedicels and at the base of petals and sepals. {ECO:0000269\|PubMed:15821980}.

Functional Description ? help Back to Top
Source	Description
UniProt	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269\|PubMed:12787254, ECO:0000269\|PubMed:15821980}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012454227.1	0.0	PREDICTED: LOB domain-containing protein 36-like
Refseq	XP_012454228.1	0.0	PREDICTED: LOB domain-containing protein 36-like
Refseq	XP_012454230.1	0.0	PREDICTED: LOB domain-containing protein 36-like
Swissprot	Q9FKZ3	1e-96	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	A0A0D2T5X9	0.0	A0A0D2T5X9_GOSRA; Uncharacterized protein
STRING	Gorai.011G104600.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	1e-92	ASYMMETRIC LEAVES 2-like 1

Link Out ? help Back to Top
Phytozome	Gorai.011G104600.2
Entrez Gene	105776230

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]