PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.011G104600.1 | ||||||||
Common Name | B456_011G104600, LOC105776230 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | LBD | ||||||||
Protein Properties | Length: 305aa MW: 33178.2 Da PI: 7.387 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 140.4 | 5.9e-44 | 7 | 106 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk+lrrkC+++Cv+apyfp ++p+kfanvhk+FGasnv kll++l++++reda++sl+yeAear+rdPvyG+vg+i+ lq++l+q++ Gorai.011G104600.1 7 PCAACKFLRRKCTQECVFAPYFPPDNPQKFANVHKVFGASNVAKLLNELNTSQREDAVNSLAYEAEARLRDPVYGCVGLISILQHKLKQMQ 97 7****************************************************************************************** PP DUF260 92 aelallkee 100 ++l+ +k+e Gorai.011G104600.1 98 HDLNNAKKE 106 ****99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 27.087 | 6 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.5E-43 | 7 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MSSSNSPCAA CKFLRRKCTQ ECVFAPYFPP DNPQKFANVH KVFGASNVAK LLNELNTSQR 60 EDAVNSLAYE AEARLRDPVY GCVGLISILQ HKLKQMQHDL NNAKKELSTY IGPQAMLPIL 120 QPSVFLQQHV GNPSSSSSSS AVMQHNMMPM MGIPTAAAAA SGQLVLREPQ QQQIFEAQQQ 180 LAAVIAAREQ QEMFRGYEQH HGGQQPEIVR FNNGFDGSAS VTATGFNQIT TAAAAATMSP 240 SLALGSFENP YQIQAQQDHH HCHGGHHPLQ AQLLLQPQQG QPQNQQQQPQ RSGSEEARSI 300 GPSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-51 | 4 | 124 | 8 | 129 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-51 | 4 | 124 | 8 | 129 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in trichomes, at the base of many lateral organs, including branching points of the inflorescence and floral organs and in the distal part of the pistil at stages when style and stigma start to develop. Also detected in pedicels and at the base of petals and sepals. {ECO:0000269|PubMed:15821980}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269|PubMed:12787254, ECO:0000269|PubMed:15821980}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012454227.1 | 0.0 | PREDICTED: LOB domain-containing protein 36-like | ||||
Refseq | XP_012454228.1 | 0.0 | PREDICTED: LOB domain-containing protein 36-like | ||||
Refseq | XP_012454230.1 | 0.0 | PREDICTED: LOB domain-containing protein 36-like | ||||
Swissprot | Q9FKZ3 | 1e-96 | LBD36_ARATH; LOB domain-containing protein 36 | ||||
TrEMBL | A0A0D2T5X9 | 0.0 | A0A0D2T5X9_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.011G104600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8008 | 24 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66870.1 | 1e-92 | ASYMMETRIC LEAVES 2-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.011G104600.1 |
Entrez Gene | 105776230 |
Publications ? help Back to Top | |||
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