PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G095900.2
Common NameB456_011G095900, LOC105777417
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 271aa    MW: 30671 Da    PI: 4.4017
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G095900.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.92.3e-2065118356
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         k++++t+eq+  Le+ Fe ++++  e++ +LAkklgL+ rqV vWFqNrRa++k
  Gorai.011G095900.2  65 KKRRLTSEQVYLLEKSFEAENKLEPERKSQLAKKLGLQPRQVAVWFQNRRARWK 118
                         56789************************************************9 PP
2HD-ZIP_I/II131.82.5e-4264156193
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         ekkrrl++eqv lLE+sFe+e+kLeperK++la++LglqprqvavWFqnrRAR+ktkqlE+dy+ Lk+++d+l+++ +++ ke+e+L++e+
  Gorai.011G095900.2  64 EKKRRLTSEQVYLLEKSFEAENKLEPERKSQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSSFDSLQSNYDTILKENEKLKSEV 154
                         69**************************************************************************************998 PP

         HD-ZIP_I/II  92 ke 93 
                         ++
  Gorai.011G095900.2 155 AS 156
                         75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.2E-1956122IPR009057Homeodomain-like
PROSITE profilePS5007117.97760120IPR001356Homeobox domain
SMARTSM003896.3E-1963124IPR001356Homeobox domain
CDDcd000865.75E-1865121No hitNo description
PfamPF000461.2E-1765118IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.7E-2266127IPR009057Homeodomain-like
PRINTSPR000312.8E-691100IPR000047Helix-turn-helix motif
PROSITE patternPS00027095118IPR017970Homeobox, conserved site
PRINTSPR000312.8E-6100116IPR000047Helix-turn-helix motif
PfamPF021831.1E-17120162IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MESGRLFFNP STTHRNMLLL GNTEPIFRGA RTMVSMEENP KKRLFFSSPE DLYDEEYYDE  60
QLPEKKRRLT SEQVYLLEKS FEAENKLEPE RKSQLAKKLG LQPRQVAVWF QNRRARWKTK  120
QLERDYDLLK SSFDSLQSNY DTILKENEKL KSEVASLTEK LQAKDVATEA IAGEKDEGLA  180
AEMASALQFS MKVEDRLSSG SVGSAVVDED APQLVDSGNS YFPSDEYSRG IGPFDGVQSE  240
DEDGSDNCGS YFSDVFATTE QEALGLWAWS *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112120RRARWKTKQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM1347920.0HM134792.1 Gossypium hirsutum homeodomain-leucine zipper protein HD3 (HB3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012456131.10.0PREDICTED: homeobox-leucine zipper protein HAT5
RefseqXP_016698586.10.0PREDICTED: homeobox-leucine zipper protein HAT5-like
SwissprotQ022831e-100HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A0D2VKJ70.0A0A0D2VKJ7_GOSRA; Uncharacterized protein
TrEMBLA0A1U8IRN10.0A0A1U8IRN1_GOSHI; homeobox-leucine zipper protein HAT5-like
STRINGGorai.011G095900.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.13e-97homeobox 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]