PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G085000.1

Common Name

B456_011G085000, LOC105776727

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

FAR1

Protein Properties

Length: 676aa MW: 78030.9 Da PI: 8.0383

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G085000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.2	4.1e-21	68	151	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YAke+GF+vr+++s +++++e + + ++Cs +g+++ ++ + r r+etrtgC a+++++ ++++w+v ++ +eHnH l Gorai.011G085000.1 68 NYYNCYAKEAGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVN-----RLRKETRTGCPAMIRMRVVDSKRWRVLEVTHEHNHLL 151 69***************************************9988.....99*******************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.9E-18	68	151	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.0E-27	270	363	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.965	557	593	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.9E-4	565	589	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.1E-6	568	595	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 676 aa Download sequence Send to blast
MEVEEEKEAF PSNNDCLAEG KCDGQILKEI NSEPTESFDV QNSLPEGKKE FVAPAVGMEF 60 ESYDDAYNYY NCYAKEAGFR VRVKNSWFKR NSREKYGAVL CCSSQGFKRI KDVNRLRKET 120 RTGCPAMIRM RVVDSKRWRV LEVTHEHNHL LGAKIYKSVK KMGSGARSKL QSSSDAEVQK 180 IKLYRALVID AVGNGTPNCN ATGGRKFSDH PHQLNLRKGD SQAIYNYLCR LQLTNPNFFY 240 LMDFTDEGCL RNVFWVDSRC RASCGYFGDV IYVDNTCMSN RYETPLVALV GVNHHGQTVL 300 LGCGLLAGET VESYTWLFKA WLTCVSGQYP QTIITDRCKA LQTAIAEVFP KSNHRFSLSL 360 IMKRVPEKLG GLRNYDAIRK TFVKAVFETL KVIEFEAAWG FMIQHFGVTD HEWLRSLYED 420 RARWAPVYLK DTFFAGLSAS RPGENLSPFF DKYVHKQTPL KEFLDKYELA LQKKHKEETL 480 ADIESRNSSP ELRTRCSFEL QLSKLYTREI FKRFQFEVEE MYSCFSTTQL HVDGPIIIFL 540 VKERVLAEGN RREIRDYEVL YNRSASEVRC ICSCFNFYGY LCRHALCVLN FNGVEEVPSK 600 YILSRCKKDY KRFYVPDQGS YNVDSIDHMQ WFNQLYRSAL QVVEEGAISL DHYKVALQAF 660 EDSLNRVHVV EEKQD*

Sequence ? help Back to Top

Protein Sequence Length: 676 aa Download sequence Send to blast

MEVEEEKEAF PSNNDCLAEG KCDGQILKEI NSEPTESFDV QNSLPEGKKE FVAPAVGMEF  60
ESYDDAYNYY NCYAKEAGFR VRVKNSWFKR NSREKYGAVL CCSSQGFKRI KDVNRLRKET  120
RTGCPAMIRM RVVDSKRWRV LEVTHEHNHL LGAKIYKSVK KMGSGARSKL QSSSDAEVQK  180
IKLYRALVID AVGNGTPNCN ATGGRKFSDH PHQLNLRKGD SQAIYNYLCR LQLTNPNFFY  240
LMDFTDEGCL RNVFWVDSRC RASCGYFGDV IYVDNTCMSN RYETPLVALV GVNHHGQTVL  300
LGCGLLAGET VESYTWLFKA WLTCVSGQYP QTIITDRCKA LQTAIAEVFP KSNHRFSLSL  360
IMKRVPEKLG GLRNYDAIRK TFVKAVFETL KVIEFEAAWG FMIQHFGVTD HEWLRSLYED  420
RARWAPVYLK DTFFAGLSAS RPGENLSPFF DKYVHKQTPL KEFLDKYELA LQKKHKEETL  480
ADIESRNSSP ELRTRCSFEL QLSKLYTREI FKRFQFEVEE MYSCFSTTQL HVDGPIIIFL  540
VKERVLAEGN RREIRDYEVL YNRSASEVRC ICSCFNFYGY LCRHALCVLN FNGVEEVPSK  600
YILSRCKKDY KRFYVPDQGS YNVDSIDHMQ WFNQLYRSAL QVVEEGAISL DHYKVALQAF  660
EDSLNRVHVV EEKQD*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012455044.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A0D2RIV7	0.0	A0A0D2RIV7_GOSRA; Uncharacterized protein
STRING	Gorai.011G085000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10788	25	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Link Out ? help Back to Top
Phytozome	Gorai.011G085000.1
Entrez Gene	105776727

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]