PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G072500.1
Common NameB456_011G072500, LOC105778353
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 323aa    MW: 35320.3 Da    PI: 6.9394
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G072500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.12.1e-17215249135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C +C + kTp+WR gp g+ktLCnaCG++y++ +l
  Gorai.011G072500.1 215 CLHCAAEKTPQWRTGPLGPKTLCNACGVRYKSGRL 249
                         99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.1E-8021301IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.187209245IPR000679Zinc finger, GATA-type
SMARTSM004019.0E-15209259IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.55E-14213272No hitNo description
Gene3DG3DSA:3.30.50.101.7E-13213247IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.22E-12214261No hitNo description
PfamPF003204.3E-15215249IPR000679Zinc finger, GATA-type
PROSITE patternPS003440215240IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MEVGDFFVGG FYGGAAGNDF SPVKMMSTER KLPENFTVDD LLDFSNEDAI INDVFLENVA  60
GNSTDSSTVT CNSSVSGGDN HLSPVNLPHS SQFSGELCVP YDELAELEWL SNFVEDSFST  120
DQNLQSSLQI FATSKSLTPE SSSSSTRPDS LIQSPSNSNP IFQHETPLPG KARSKRSRVA  180
PCDWSTRLLH LNPKSAAQKK RENPNANSEL PVRKCLHCAA EKTPQWRTGP LGPKTLCNAC  240
GVRYKSGRLV PEYRPAASPT FVSAKHSNSH RKVLELRRQK EFQRAQHQQL ISQTSVFGIS  300
NGGCADDFLI HHHGGPNFSH VI*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269|PubMed:25265867}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5847472e-90JX584747.1 Gossypium hirsutum clone NBRI_GE18132 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012457494.10.0PREDICTED: GATA transcription factor 12-like
SwissprotO826321e-73GATA9_ARATH; GATA transcription factor 9
SwissprotP697812e-73GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A0D2RI930.0A0A0D2RI93_GOSRA; GATA transcription factor
STRINGGorai.011G072500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56822749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.17e-74GATA transcription factor 9
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]