PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G050400.4

Common Name

B456_011G050400, LOC105778174

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 348aa MW: 39184 Da PI: 8.9994

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G050400.4	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	50.7	4.8e-16	23	118	2	86
trihelix 2 WtkqevlaLiearr.emeerlrrg........klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr..tsessstcpy 81 Wt +e+++Liea++ + e+r++r+ k + +W++v ++++ +g+ rs++qC++kw+nl ++ykk++e ++k ++++ s+ + Gorai.011G050400.4 23 WTVNETMVLIEAKEmDYERRMKRSgdhsegrnKPTELRWKWVEDYCWGKGCLRSQNQCNDKWDNLMRDYKKVREYQRKVaeREGNDSKQRS 113 ***********963333333322222222268899************************************9998433556667777 PP trihelix 82 fdqle 86 + ++e Gorai.011G050400.4 114 YWEME 118 77776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.876	15	88	IPR017877	Myb-like domain
Pfam	PF13837	2.3E-12	22	118	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MHLMMDDQGG NNAVTREYRK GNWTVNETMV LIEAKEMDYE RRMKRSGDHS EGRNKPTELR 60 WKWVEDYCWG KGCLRSQNQC NDKWDNLMRD YKKVREYQRK VAEREGNDSK QRSYWEMEKN 120 ERKEKSLPSN MLRQIYERLE EVVEKKGAQT VAATAGGGGG SDPNITNLPY VMDRPMVSTF 180 QPSLPPLLQH QLSAPIPAAI PLPLPQASPQ LPPPPAPIIQ PPPLSYAQPL PTIDSDTSEH 240 SDSPAKRRRR GGGNGEGTSG TANNINEVST AISRSASIIA EAIQASEERE ERRHRDLLSF 300 HERRLRIEES KTEVNKKGMD GLVDAINKLA NSIFALASHK NQSSAPK*

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MHLMMDDQGG NNAVTREYRK GNWTVNETMV LIEAKEMDYE RRMKRSGDHS EGRNKPTELR  60
WKWVEDYCWG KGCLRSQNQC NDKWDNLMRD YKKVREYQRK VAEREGNDSK QRSYWEMEKN  120
ERKEKSLPSN MLRQIYERLE EVVEKKGAQT VAATAGGGGG SDPNITNLPY VMDRPMVSTF  180
QPSLPPLLQH QLSAPIPAAI PLPLPQASPQ LPPPPAPIIQ PPPLSYAQPL PTIDSDTSEH  240
SDSPAKRRRR GGGNGEGTSG TANNINEVST AISRSASIIA EAIQASEERE ERRHRDLLSF  300
HERRLRIEES KTEVNKKGMD GLVDAINKLA NSIFALASHK NQSSAPK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012457273.1	0.0	PREDICTED: uncharacterized protein LOC105778174 isoform X2
TrEMBL	A0A0D2VIB6	0.0	A0A0D2VIB6_GOSRA; Uncharacterized protein
STRING	Gorai.011G050400.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	3e-61	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Gorai.011G050400.4
Entrez Gene	105778174

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]