PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G037500.1
Common NameB456_011G037500, LOC105778134
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 275aa    MW: 29799.8 Da    PI: 4.9794
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G037500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.61.5e-2976134259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ +p++++itY+ eHnh 
  Gorai.011G037500.1  76 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRVNPTMLVITYSCEHNHA 134
                         69*************************998****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-3070136IPR003657WRKY domain
PROSITE profilePS5081130.96370136IPR003657WRKY domain
SuperFamilySSF1182904.32E-2573136IPR003657WRKY domain
SMARTSM007743.3E-3475135IPR003657WRKY domain
PfamPF031064.9E-2577133IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MDSGGSSSSS FRKVRNPFVT DQELEESDNV SSVTGAESPP PSTTKKGKRS MQKRVVSVPI  60
KDVEGSRLKG EGAPPSDSWA WRKYGQKPIK GSPYPRGYYR CSSSKGCPAR KQVERSRVNP  120
TMLVITYSCE HNHAWPASRH NNTSAKQAAA AAAAGEASES PTKSSTAVKH EPSTSQPDTE  180
PDSGMEDGFA CLAEDSILTT GDEFAWFGEM ETTSSTVLES PLFSERDNSE ADETAMIFPM  240
REEDESLFAD LGELPECSFV FRHQRNVGPQ VGIC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-1953136679Disease resistance protein RRS1
5w3x_D1e-1953136679Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0311070.0KF031107.1 Gossypium hirsutum WRKY transcription factor 81 (WRKY81) mRNA, complete cds.
GenBankKF6697930.0KF669793.1 Gossypium hirsutum WRKY transcription factor 91 (WRKY91) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012457206.10.0PREDICTED: probable WRKY transcription factor 65
SwissprotQ9LP561e-80WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBLB2ZAR20.0B2ZAR2_GOSRA; Putative WRKY transcription factor
STRINGGorai.011G037500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53832849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.18e-82WRKY DNA-binding protein 65
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Singh V,Roy S,Singh D,Nandi AK
    Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes.
    J. Biosci., 2014. 39(1): p. 119-26
    [PMID:24499796]