PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G028400.1

Common Name

B456_011G028400, LOC105777317

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 187aa MW: 20967.6 Da PI: 9.4142

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G028400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.2	1.1e-11	14	65	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 r+ + +Er+RR++++ ++eL +l+P+ +s+ s + L +A +YIk Lq Gorai.011G028400.1 14 RTDRKLIERNRRNQMKALYSELNSLVPHY---NSREsISLPDQLGEAANYIKRLQ 65 778899********************7...55555***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.598	12	64	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.22E-13	13	83	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.5E-8	14	65	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.71E-7	14	69	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.7E-12	14	78	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.8E-5	18	70	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MEINSNNPNN FSSRTDRKLI ERNRRNQMKA LYSELNSLVP HYNSRESISL PDQLGEAANY 60 IKRLQTNLER MKQRKDSLIS GGQSMNIASS RTGFSPKVPQ IQIHEMGSSL VIGLTTDTHS 120 RFIFNDTIRI LHEEGADIVN ASFSVVGNTA FHTIHLTVGE LTPDYHGVAV TRIAERLNKF 180 IYDAHA*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX589977	1e-133	JX589977.1 Gossypium hirsutum clone NBRI_GE24781 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012455976.1	1e-136	PREDICTED: transcription factor bHLH125-like isoform X1
TrEMBL	A0A0D2ULK2	1e-135	A0A0D2ULK2_GOSRA; Uncharacterized protein
STRING	Gorai.011G028400.1	1e-135	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1278	25	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	1e-43	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.011G028400.1
Entrez Gene	105777317

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]