PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G006600.2

Common Name

B456_011G006600, LOC105776512

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 384aa MW: 42193.6 Da PI: 5.2383

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G006600.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.1	5.8e-31	217	275	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+ Gorai.011G006600.2 217 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 275 699**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.0E-31	210	277	IPR003657	WRKY domain
PROSITE profile	PS50811	33.109	211	277	IPR003657	WRKY domain
SuperFamily	SSF118290	2.35E-26	214	277	IPR003657	WRKY domain
SMART	SM00774	1.4E-37	216	276	IPR003657	WRKY domain
Pfam	PF03106	7.5E-26	218	275	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence Send to blast
MFFGLEMENY QGDLNDIVRA SAEPAHFSDM VPQLSSWQQE FPSSDPLSFS SSAMEDDYST 60 NTFGDPFSAI RDPLLLLQEL NVVGTGSSST YFNNSPNSTN DHHHMGGFDD MTSPCNIFSR 120 IQISHSSNPL PPCDPPRMAA ASTGLGGHKA PAVFPSDMVN AKSCLIDNTA AAASVPVQIS 180 SPRNLGIKRR KSQGKKVVCI PAPAAANSRS SGEVVPSDLW AWRKYGQKPI KGSPYPRGYY 240 RCSSSKGCSA RKQVERSRTD PNMLVITYTS EHNHPWPTQR NALAGSTRSQ PSKPNANNTG 300 SKMGSPSDSE PQKTTKETIK EETEMDDMAK QQLDIDEATT VETQQQQHDQ DFFADLDEIL 360 FDQQKENKPM DPFTLFDYNN ASF*

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence Send to blast

MFFGLEMENY QGDLNDIVRA SAEPAHFSDM VPQLSSWQQE FPSSDPLSFS SSAMEDDYST  60
NTFGDPFSAI RDPLLLLQEL NVVGTGSSST YFNNSPNSTN DHHHMGGFDD MTSPCNIFSR  120
IQISHSSNPL PPCDPPRMAA ASTGLGGHKA PAVFPSDMVN AKSCLIDNTA AAASVPVQIS  180
SPRNLGIKRR KSQGKKVVCI PAPAAANSRS SGEVVPSDLW AWRKYGQKPI KGSPYPRGYY  240
RCSSSKGCSA RKQVERSRTD PNMLVITYTS EHNHPWPTQR NALAGSTRSQ PSKPNANNTG  300
SKMGSPSDSE PQKTTKETIK EETEMDDMAK QQLDIDEATT VETQQQQHDQ DFFADLDEIL  360
FDQQKENKPM DPFTLFDYNN ASF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	2e-25	191	278	2	80	Disease resistance protein RRS1
5w3x_D	2e-25	191	278	2	80	Disease resistance protein RRS1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM438458	1e-98	KM438458.1 Gossypium aridum WRKY27 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012454646.1	0.0	PREDICTED: probable WRKY transcription factor 14 isoform X2
Swissprot	Q9SA80	3e-96	WRK14_ARATH; Probable WRKY transcription factor 14
TrEMBL	A0A0D2UKC0	0.0	A0A0D2UKC0_GOSRA; Uncharacterized protein
STRING	Gorai.011G006600.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30650.1	4e-90	WRKY DNA-binding protein 14

Link Out ? help Back to Top
Phytozome	Gorai.011G006600.2
Entrez Gene	105776512

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]