PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G256500.1
Common NameB456_010G256500, LOC105772814
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 776aa    MW: 84895.6 Da    PI: 6.4839
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G256500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.12.7e-07240259525
                         --SGGGGTS--TTTTT-SS-S CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                         +C+ffar G+C  G++C+F H
  Gorai.010G256500.1 240 ICDFFAR-GWCIKGSSCRFLH 259
                         6******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.089235262IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-6235259IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-5240259IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 776 aa     Download sequence    Send to blast
MSSSTSAAVP RAGNDDEIRA ASIMEREINS SDMEIDDDDE NEEDLQSSSN RNDAGNVVES  60
RGHDGQLGSD LSSTPGNCEP RILAKTLNVG EGSANFEFSS LPNESLATQK EGLCTNYVAS  120
KYSVSGKEPA KENGIQEYMG NGKDSRNMLE RKASQDYPDQ HTNGKGHFVV DESNSLPVGH  180
HSGGVNNGLG FEEKNKQMDV QTDDDKRKIK SRFHRSAAPQ TSAGSLSPSS NSENKRPALI  240
CDFFARGWCI KGSSCRFLHI KDGGKNPGQL PQEDTAAADG KRAVELDEGF RSAAERSRSP  300
ASADALPSSV VNKTGLSSHF FSERILPLGH DENQRLHLFH EMNKFPLLQS KDKSLGTAPA  360
SQWFSASTDD FGPSKDVRQN GIGQNLPVSL SDRSTFGNGF LPEYKSSLSG SVISLGDIYS  420
ENQSHHVSTH LVSLPLNFSL SACSLGAQKM LDNDRGCHTS KLSSLLQGPF PFSSSKPEKF  480
LVNDVASDPL HFSENRIKIS SDDWEPSVPF RPSFFVTSGI SSPRGEYDPL RDSIDVSSAG  540
ERPLKFSFSN QGPSLLNVAD PPTYGNFASR RPLLPERNDD KRTASCHNGV HENLVSNNCN  600
PSGKDSLTTD ANDGTSAVDM QNGTLVKEEI SSVASHVKDI SKANKNDRDH DGRHRRGGSR  660
CKRDLEVDRV REKNEIDVEV EHKADGDYKE SKAMRHFHAA LVDLIKQLLK PTWREGHLSK  720
DAHNTIVKKA VDKVFGSIQP HQLPVTFESV KQYLSSSQPK ITRLVEGYIE KYKKS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5825134e-38JX582513.1 Gossypium hirsutum clone NBRI_GE15352 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012449729.10.0PREDICTED: protein FRIGIDA-ESSENTIAL 1-like isoform X1
TrEMBLA0A0D2SYX30.0A0A0D2SYX3_GOSRA; Uncharacterized protein
STRINGGorai.010G256500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM156171016
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.17e-47C3H family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]