PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.010G247100.6 | ||||||||
Common Name | B456_010G247100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | G2-like | ||||||||
Protein Properties | Length: 332aa MW: 35577.9 Da PI: 8.6508 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 107.1 | 9.9e-34 | 47 | 101 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLH+rFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl Gorai.010G247100.6 47 KQRLRWTHELHDRFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 101 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.014 | 44 | 104 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.2E-32 | 46 | 102 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.11E-17 | 46 | 101 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.4E-26 | 47 | 102 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.6E-9 | 49 | 100 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.7E-18 | 133 | 176 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MYHPKTVPGS SLVRSNSLVH GQHLDCGASS MDPVSGGNSS NPNLASKQRL RWTHELHDRF 60 VDAVAQLGGP DRATPKGVLR VMGVQGLTIY HVKSHLQKYR LAKYLPDSSS DGKKPDKKET 120 GDMLSNLDGS SGMQITEALK LQMEVQKRLH EQLERQLQLR IEAQGKYLKK IIEEQRLGGV 180 LAEAPGTGAS VPALGDNGLE SDKKTDPATP APTSESPLQD KAAKEGTSAK SHSVDESFSS 240 HHEPLTPDSG CHVGSPAGSP KGEMLKKKQR VSMAGAFAKP EMVLPHQILD SSINASYQQS 300 QSVFMGEQFN PSSGISIRNE NQSGKGSGTE L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 9e-23 | 47 | 104 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 9e-23 | 47 | 104 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 9e-23 | 47 | 104 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 9e-23 | 47 | 104 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00252 | DAP | Transfer from AT2G01060 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012450884.1 | 0.0 | PREDICTED: myb family transcription factor APL | ||||
Refseq | XP_012450885.1 | 0.0 | PREDICTED: myb family transcription factor APL | ||||
Swissprot | Q9SJW0 | 1e-125 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | A0A0D2SYM1 | 0.0 | A0A0D2SYM1_GOSRA; Uncharacterized protein | ||||
STRING | EOY29060 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 1e-104 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.010G247100.6 |
Publications ? help Back to Top | |||
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