PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.010G247100.5

Common Name

B456_010G247100, LOC105773477

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 334aa MW: 35805.2 Da PI: 8.6508

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.010G247100.5	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107	1e-33	47	101	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLH+rFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl Gorai.010G247100.5 47 KQRLRWTHELHDRFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 101 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.014	44	104	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.2E-32	46	102	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.13E-17	46	101	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.5E-26	47	102	IPR006447	Myb domain, plants
Pfam	PF00249	2.6E-9	49	100	IPR001005	SANT/Myb domain
Pfam	PF14379	3.0E-23	133	178	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MYHPKTVPGS SLVRSNSLVH GQHLDCGASS MDPVSGGNSS NPNLASKQRL RWTHELHDRF 60 VDAVAQLGGP DRATPKGVLR VMGVQGLTIY HVKSHLQKYR LAKYLPDSSS DGKKPDKKET 120 GDMLSNLDGS SGMQITEALK LQMEVQKRLH EQLEVQRQLQ LRIEAQGKYL KKIIEEQRLG 180 GVLAEAPGTG ASVPALGDNG LESDKKTDPA TPAPTSESPL QDKAAKEGTS AKSHSVDESF 240 SSHHEPLTPD SGCHVGSPAG SPKGEMLKKK QRVSMAGAFA KPEMVLPHQI LDSSINASYQ 300 QSQSVFMGEQ FNPSSGISIR NENQSGKGSG TEL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	9e-23	47	104	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	9e-23	47	104	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	9e-23	47	104	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	9e-23	47	104	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00252	DAP	Transfer from AT2G01060	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012450884.1	0.0	PREDICTED: myb family transcription factor APL
Refseq	XP_012450885.1	0.0	PREDICTED: myb family transcription factor APL
Swissprot	Q9SJW0	1e-129	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A0D2UKC2	0.0	A0A0D2UKC2_GOSRA; Uncharacterized protein
STRING	EOY29060	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	1e-106	G2-like family protein

Link Out ? help Back to Top
Phytozome	Gorai.010G247100.5
Entrez Gene	105773477

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]