PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G240800.2
Common NameB456_010G240800, LOC105772790
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 385aa    MW: 44617.6 Da    PI: 5.1314
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G240800.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.51.2e-34141052102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+ye+++d+++++++sws++++sf+v+++ efa+++Lp++Fkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F +g+ +
  Gorai.010G240800.2  14 FLTKTYEMVDDHSTDSIVSWSASNRSFIVWNPLEFARDLLPRFFKHNNFSSFIRQLNTYGFRKSDPEQ---------WEFANEDFIRGQPH 95 
                         9********************999***************************************99988.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++i+r+k 
  Gorai.010G240800.2  96 LLKNIHRRKP 105
                         *******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.9E-38498IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467856.26E-359103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.3E-6110103IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.6E-3114103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.9E-191437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.9E-195264IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.9E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MDDAQSSSSS LPPFLTKTYE MVDDHSTDSI VSWSASNRSF IVWNPLEFAR DLLPRFFKHN  60
NFSSFIRQLN TYGFRKSDPE QWEFANEDFI RGQPHLLKNI HRRKPVHSHS MQNLLGQGAS  120
PLTESERQSF RDEVERLKSE KMSLVLELKR HEEERQGFEM QMQILRERLQ TMERRQQSMV  180
SNVARALKRP GFPIDPTPQF EVHVRKRRLP RIAYLYDESR IEDNPNPDTT SMSNMDPFEQ  240
LESSMVFWEN AIHDFGRANV FDESTSCPES PSISSIQLNI ETQPKSPQID MNSEPSTVVT  300
PEPVTSMEQP APSPAGVNDG FWEQFLTENP GSTDIREVLP ERKDPDTRKD EDKPEGHSRF  360
WWNNMKNVNN LTEQMGHLTS AERT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-24410319129Heat shock factor protein 1
5d5v_B4e-24410319129Heat shock factor protein 1
5d5v_D4e-24410319129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0674130.0KR067413.1 Gossypium hirsutum HSF32 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012449696.10.0PREDICTED: heat stress transcription factor A-4a-like
RefseqXP_012449697.10.0PREDICTED: heat stress transcription factor A-4a-like
SwissprotO494031e-127HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLA0A0D2VEK00.0A0A0D2VEK0_GOSRA; Uncharacterized protein
STRINGGorai.010G240800.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-122heat shock transcription factor A4A
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]