PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.010G230500.1

Common Name

B456_010G230500, LOC105774456

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GATA

Protein Properties

Length: 318aa MW: 34625.2 Da PI: 6.3702

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.010G230500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	52.1	8.6e-17	212	246	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C + kTp+WR gp g+ktLCnaCG++y++ +l Gorai.010G230500.1 212 CLHCASEKTPQWRTGPMGPKTLCNACGVRYKSGRL 246 99*****************************9885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF016992	4.2E-77	23	300	IPR016679	Transcription factor, GATA, plant
PROSITE profile	PS50114	12.215	206	242	IPR000679	Zinc finger, GATA-type
SMART	SM00401	9.8E-16	206	256	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	2.28E-14	208	269	No hit	No description
Gene3D	G3DSA:3.30.50.10	1.1E-13	208	243	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	1.70E-13	211	258	No hit	No description
PROSITE pattern	PS00344	0	212	237	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	1.1E-14	212	246	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MEMGDLFVGG YYGGGATGDF SPEKRMSMVE EKLGENFIVD DLLDFSNEDA VIGDGLLFDN 60 VAGNSTDLST VTCNSSVSGG ENHFSSANFT HSSQFSGELG VPYDELAELE WLSNFVEDSF 120 STVPNLQSNH QIFALPTPES SSSSTRSDSL PRSSTDPIFQ HGAPLPGKAR SKRSMTAPCD 180 WSTRVLHLNP KPTGHKNRDN PNGNTEYSGR KCLHCASEKT PQWRTGPMGP KTLCNACGVR 240 YKSGRLVPEY RPASSPTFVS TEHSNSHRKV LEIRRQKDMQ RGGQGTRFLS QTSVFPISNG 300 GDVADDFLIH HHGGPRF*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012452410.1	0.0	PREDICTED: GATA transcription factor 4-like
TrEMBL	A0A0D2VE65	0.0	A0A0D2VE65_GOSRA; GATA transcription factor
STRING	Gorai.010G230500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5682	27	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32890.1	1e-71	GATA transcription factor 9

Link Out ? help Back to Top
Phytozome	Gorai.010G230500.1
Entrez Gene	105774456

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]