PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.010G219200.1

Common Name

B456_010G219200, LOC105774341

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 328aa MW: 37139.8 Da PI: 6.2828

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.010G219200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	80.1	2.3e-25	179	239	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK++ +s++prsY+rC+++ gC++ k+v+r ++d+++ +itY g+H+++ Gorai.010G219200.1 179 EDGHAWRKYGQKNILNSKHPRSYFRCSHKhdqGCSAIKQVQRMEDDTQTYHITYIGTHTCR 239 8*************************99999***********************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.6E-25	164	239	IPR003657	WRKY domain
PROSITE profile	PS50811	19.611	173	236	IPR003657	WRKY domain
SuperFamily	SSF118290	6.8E-24	175	239	IPR003657	WRKY domain
SMART	SM00774	1.5E-35	178	240	IPR003657	WRKY domain
Pfam	PF03106	1.4E-24	179	239	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MILSLLLLSP TYTHIHIYIY IYIYIHTLTK TGSEATNKSQ RGVFSGGVIR TMDTLYPWPE 60 PETLSSNKKR VIQQLAEGQQ CATELQVIVL QNNKPSQQAE ELVQKILWSF NQTISMLSEA 120 GHHDEVISQN QATCNDDCKS QDSSESSKRS LSAFTKDKRG CYKRKRFAQT STVVSDKIED 180 GHAWRKYGQK NILNSKHPRS YFRCSHKHDQ GCSAIKQVQR MEDDTQTYHI TYIGTHTCRG 240 QYPSMATPRI DRLSPILKLE SEEQTTTPSD VTDLDSMTMW TDVMMGGVGF EADAVSNMYS 300 CTEITCLDLE PVELENGLQF DYPDFAS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ir8_A	2e-26	171	239	1	69	OsWRKY45
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gra.2641	0.0	seedling

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF031091	0.0	KF031091.1 Gossypium hirsutum WRKY transcription factor 46 (WRKY46) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012452261.1	0.0	PREDICTED: probable WRKY transcription factor 70
TrEMBL	A0A0D2RBT4	0.0	A0A0D2RBT4_GOSRA; Uncharacterized protein
STRING	Gorai.010G219200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4061	27	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56400.1	6e-43	WRKY DNA-binding protein 70

Link Out ? help Back to Top
Phytozome	Gorai.010G219200.1
Entrez Gene	105774341

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]