PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.010G215200.1

Common Name

B456_010G215200, LOC105772740

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NF-YC

Protein Properties

Length: 315aa MW: 33902.4 Da PI: 5.3024

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.010G215200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	58.2	1.8e-18	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l ++ + + +t++ ++ +v++ ++fdfl div r Gorai.010G215200.1 6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDHTYEITLQRGAKTMNSLHLKHCVQSYNVFDFLRDIVSR 86 5789**************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.5E-25	3	72	IPR009072	Histone-fold
SuperFamily	SSF47113	9.29E-20	4	89	IPR009072	Histone-fold
Pfam	PF00808	5.1E-19	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDHT YEITLQRGAK 60 TMNSLHLKHC VQSYNVFDFL RDIVSRVPDY GHGHSDATAA AAAGGTDDRT ISRRRKATGD 120 EVNDSDEESK RSRMHDMGHA GTSGRGRGRG RGRGRGRGAR NVERDAHREI EPEPCSTLQQ 180 NNKSHSTSGM VIDDGSELKE PVKENTAAED ANQAVRNFDL NAEVDENVDT KASATAAKVA 240 APASSVGVAS ATAAPAAPAA AAQPSTAEPT TEAKHEEYPG WSLSDMDKIA IDPLQLARLG 300 GRLDEDEEDY DEEG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	1e-19	2	72	5	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	146	156	RGRGRGRGRGR
2	148	157	RGRGRGRGRG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX964448	0.0	JX964448.1 Gossypium hirsutum clone NBRI_TRANS-717 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012449612.1	0.0	PREDICTED: uncharacterized protein LOC105772740
TrEMBL	A0A0D2UIM6	0.0	A0A0D2UIM6_GOSRA; Uncharacterized protein
STRING	Gorai.010G215200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3506	24	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	1e-71	nuclear factor Y, subunit C11

Link Out ? help Back to Top
Phytozome	Gorai.010G215200.1
Entrez Gene	105772740

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]