PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.010G215100.1 | ||||||||
Common Name | B456_010G215100, LOC105772137 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 225aa MW: 24463.1 Da PI: 10.2842 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.2 | 0.00027 | 53 | 75 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C F+++ L H++ H Gorai.010G215100.1 53 FSCNYCRSKFTSPQALGGHQNAH 75 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 0.001 | 49 | 79 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 4.87E-6 | 50 | 80 | No hit | No description |
PROSITE profile | PS50157 | 10.72 | 53 | 80 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 55 | 75 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MASEAANASR VESSNLSNDN RSSRESEIGL NLSTTMNPII TSSESQPEPE RTFSCNYCRS 60 KFTSPQALGG HQNAHRQERA LAKRLREIQA QTFTPPTYPH YPYPTLSSTP YQGSLNRSIL 120 GVRLGSMIRK PLHSWTLFGS GGYLSGHGYP RLAMRNHLPP SFNGRLSINN NGGIAISGPS 180 TSSRMVTGRG PLESFARNSQ ANVGANRPAT NQNDDSEIDL TLRL* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012448914.1 | 1e-163 | PREDICTED: zinc finger protein 7-like | ||||
TrEMBL | A0A0D2VDB6 | 1e-162 | A0A0D2VDB6_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.010G215100.1 | 1e-163 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM24595 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24625.1 | 7e-16 | zinc finger protein 7 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.010G215100.1 |
Entrez Gene | 105772137 |
Publications ? help Back to Top | |||
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