PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.010G212800.1 | ||||||||
Common Name | B456_010G212800, LOC105772184 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 649aa MW: 73872.7 Da PI: 7.8855 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.8 | 6e-09 | 463 | 504 | 2 | 40 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 ++WT+eE ell ++ +++++g +W+ I++++g+gR+ +++ Gorai.010G212800.1 463 KPWTKEEIELLRKGTQKYPKGtshRWEVISEYIGTGRSVEEI 504 69***********************************99876 PP | |||||||
2 | Myb_DNA-binding | 27.2 | 8.9e-09 | 591 | 635 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 W++ + l++a k ++++ +W+++a ++ g+t +qck ++ Gorai.010G212800.1 591 VWSAVQERALIQALKTFPKEtsqRWERVATAVP-GKTVNQCKKKFA 635 6********************************.********9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46565 | 1.83E-20 | 92 | 175 | IPR001623 | DnaJ domain |
Gene3D | G3DSA:1.10.287.110 | 8.7E-21 | 94 | 199 | IPR001623 | DnaJ domain |
SMART | SM00271 | 2.1E-14 | 96 | 171 | IPR001623 | DnaJ domain |
CDD | cd06257 | 8.66E-13 | 97 | 168 | IPR001623 | DnaJ domain |
Pfam | PF00226 | 1.7E-16 | 97 | 176 | IPR001623 | DnaJ domain |
PROSITE profile | PS50076 | 18.349 | 97 | 179 | IPR001623 | DnaJ domain |
PRINTS | PR00625 | 1.6E-7 | 102 | 120 | IPR001623 | DnaJ domain |
PRINTS | PR00625 | 1.6E-7 | 120 | 135 | IPR001623 | DnaJ domain |
PRINTS | PR00625 | 1.6E-7 | 151 | 171 | IPR001623 | DnaJ domain |
PROSITE pattern | PS00636 | 0 | 156 | 175 | IPR018253 | DnaJ domain, conserved site |
Gene3D | G3DSA:1.10.10.60 | 3.3E-6 | 456 | 504 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 7.076 | 460 | 515 | IPR017884 | SANT domain |
SMART | SM00717 | 1.9E-7 | 461 | 514 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-7 | 463 | 504 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.49E-8 | 463 | 506 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.34E-6 | 464 | 504 | No hit | No description |
PROSITE profile | PS51293 | 10.24 | 587 | 642 | IPR017884 | SANT domain |
SMART | SM00717 | 3.8E-9 | 588 | 640 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-5 | 589 | 634 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.69E-9 | 590 | 644 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.2E-7 | 591 | 634 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.69E-6 | 592 | 638 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 649 aa Download sequence Send to blast |
MAVRTSIQLI AYSQELVDGQ PLYVSSNCLP VKALKYEPAG HAFHNAALKL FGCEEDDTTE 60 VDDQKVGNDK EQVYMPSSDS YSSKGKKKSG ADGKQQDHYA LLGLSHLRYL ATEDQIRKSY 120 REAALRHHPD KLANLLLAEE TEAAKQAKKD EIENHFKSIQ EAYEILIDPI KRRIYDSTDE 180 FDDEIPTECA PQDFFKVFGP AFMRNGRWSV TQPIPSLGDD STSLKDVDNF YNFWYSFKSW 240 REFPHADEYD LEQSESRDHK RWMERQNAKL SEKARKEEYA RIRALVDNAY KRDPRILRRK 300 EEEKAEKQRK KEAKVRAKQL QEEEAARAAE EERRRKEEEE KRAAEAALQH KKNKEKEKKL 360 LRKERTRLRA LSAPVLSQHL LDLSEEDVES LCMTLGFEQL RSLCDKMDNK EALERAKLIQ 420 DARGYNSNTE EKKIDDTNGS HLNGSVDSNG SILSSSSSEK KEKPWTKEEI ELLRKGTQKY 480 PKGTSHRWEV ISEYIGTGRS VEEILKATKT VLLQKPDATK AFDSFLEKRK PAATIASPLS 540 TREEVEGVSM PSRTENTTAK TSSAEDSGKA ASNPVDVVSG NGVSSSSEQD VWSAVQERAL 600 IQALKTFPKE TSQRWERVAT AVPGKTVNQC KKKFALLKEN FRSKKSTA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5dje_A | 1e-20 | 186 | 296 | 13 | 123 | Zuotin |
5dje_B | 1e-20 | 186 | 296 | 13 | 123 | Zuotin |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012448954.1 | 0.0 | PREDICTED: dnaJ homolog subfamily C member 2-like | ||||
Refseq | XP_012448955.1 | 0.0 | PREDICTED: dnaJ homolog subfamily C member 2-like | ||||
TrEMBL | A0A0D2UGD3 | 0.0 | A0A0D2UGD3_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.010G212800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2361 | 27 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11450.1 | 0.0 | DnaJ domain ;Myb-like DNA-binding domain |
Link Out ? help Back to Top | |
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Phytozome | Gorai.010G212800.1 |
Entrez Gene | 105772184 |
Publications ? help Back to Top | |||
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