PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.010G189600.1

Common Name

B456_010G189600, LOC105773826

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

FAR1

Protein Properties

Length: 694aa MW: 80600.5 Da PI: 5.9013

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.010G189600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68.3	1.9e-21	68	159	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHe 88 ++Y ++A++ GFs+rk++s+ s + g i+kr+fvC+++g++ +kk + +++r r++ r+gC+ak+ ++ke ++w v ++++ HnHe Gorai.010G189600.1 68 EYYGNFARKNGFSIRKERSRLSPQLG-IYKRDFVCYRSGFAPARKKLSGEHHRDRKSVRCGCDAKMYLSKEVidgVSQWFVVQFSNVHNHE 157 59******************8888.****************9******************99867789*********** PP FAR1 89 la 90 l Gorai.010G189600.1 158 LL 159 96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.7E-19	68	159	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.5E-18	291	382	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.916	565	600	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.7E-8	572	599	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.2E-6	575	602	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 694 aa Download sequence Send to blast
MASVASKNMW LRRQQCPCGD WKCYVIYEGD AEETSIVSQI VKTESLQSQD MVAPYVGMVF 60 KTDDDAFEYY GNFARKNGFS IRKERSRLSP QLGIYKRDFV CYRSGFAPAR KKLSGEHHRD 120 RKSVRCGCDA KMYLSKEVID GVSQWFVVQF SNVHNHELLE DDQVRLLPAY RKINEADQER 180 ILLLSKAGFP IHRIVKVLEL EKGIQGGQLP FLERDVRNFV QNRKKVVQEN DALLNEKREN 240 DTMELLEACK ATKEADQDFV YDFTVDQNDK VENIAWSYGV AVNSYALFGD VVYFDTTYRS 300 ITYDMLFGAW FGIDNNGQPI FFGCVLLQDE TLRSFAWAIQ TLIRFMKGRC PQTILSDLDP 360 RLRDAITSEL PSTKHVTSIW NILPKVSSWF SLQLGSQYAD FKSEFDALYR LESTEDFELR 420 WNQMVSIFGL GSDKHITLLY SLRTSWVLSY VRVHFLARMA TTAYSKSVDA FLKGIFGAQS 480 CLRGFFEQVG IAANLQNERH QEMQCQYLHM KTCLPIEEHS RKILTPFAFN ALQQELIVSM 540 QYAASEMANG SYLVRHFRKI DGESLVIWIP EDEQIHCSCK EFESSGILCR HALRVFIDKN 600 YFQLPEKYFL SRWRRESSLM FYDDHSVHDK DDEWFQEFQS LTETLFAESS ITKERSDYIR 660 RELTKELTRL LNEVRDMPEN DGAPMDFTLT PTD*

Sequence ? help Back to Top

Protein Sequence Length: 694 aa Download sequence Send to blast

MASVASKNMW LRRQQCPCGD WKCYVIYEGD AEETSIVSQI VKTESLQSQD MVAPYVGMVF  60
KTDDDAFEYY GNFARKNGFS IRKERSRLSP QLGIYKRDFV CYRSGFAPAR KKLSGEHHRD  120
RKSVRCGCDA KMYLSKEVID GVSQWFVVQF SNVHNHELLE DDQVRLLPAY RKINEADQER  180
ILLLSKAGFP IHRIVKVLEL EKGIQGGQLP FLERDVRNFV QNRKKVVQEN DALLNEKREN  240
DTMELLEACK ATKEADQDFV YDFTVDQNDK VENIAWSYGV AVNSYALFGD VVYFDTTYRS  300
ITYDMLFGAW FGIDNNGQPI FFGCVLLQDE TLRSFAWAIQ TLIRFMKGRC PQTILSDLDP  360
RLRDAITSEL PSTKHVTSIW NILPKVSSWF SLQLGSQYAD FKSEFDALYR LESTEDFELR  420
WNQMVSIFGL GSDKHITLLY SLRTSWVLSY VRVHFLARMA TTAYSKSVDA FLKGIFGAQS  480
CLRGFFEQVG IAANLQNERH QEMQCQYLHM KTCLPIEEHS RKILTPFAFN ALQQELIVSM  540
QYAASEMANG SYLVRHFRKI DGESLVIWIP EDEQIHCSCK EFESSGILCR HALRVFIDKN  600
YFQLPEKYFL SRWRRESSLM FYDDHSVHDK DDEWFQEFQS LTETLFAESS ITKERSDYIR  660
RELTKELTRL LNEVRDMPEN DGAPMDFTLT PTD*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012451432.1	0.0	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 isoform X1
Swissprot	Q9LKR4	0.0	FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBL	A0A0D2UH57	0.0	A0A0D2UH57_GOSRA; Uncharacterized protein
STRING	Gorai.010G189600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1765	26	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	0.0	FAR1-related sequence 10

Link Out ? help Back to Top
Phytozome	Gorai.010G189600.1
Entrez Gene	105773826

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]