PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.010G181100.1

Common Name

B456_010G181100, LOC105773558

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 294aa MW: 33253 Da PI: 9.8706

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.010G181100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.3	1.7e-33	71	124	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH++Fv+ave+LGG+++AtPk +l++m+vkgLt++hvkSHLQ+YR+ Gorai.010G181100.1 71 PRLRWTPDLHQCFVHAVERLGGEDRATPKMVLQIMDVKGLTISHVKSHLQMYRS 124 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.315	67	127	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.0E-32	67	125	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.56E-15	69	125	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.7E-25	71	125	IPR006447	Myb domain, plants
Pfam	PF00249	6.9E-8	72	123	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MKRVDVDSCW LKGCCSSSSS LDDSGGISVY SPSPSMMRVM RRCHHKDDNL QLPEISLKSP 60 IVRPYVRSKM PRLRWTPDLH QCFVHAVERL GGEDRATPKM VLQIMDVKGL TISHVKSHLQ 120 MYRSTKHEQM IQVTEAATAS RRNEKVSELM NCPQNQQFKD QVRPYNLGLG IEGMPSFTIF 180 RQPQWNGNKV SNQLSYRELT NKGSEQRSST SYIIFKDLLK SCTIPENREK LNVGQHGGAD 240 WKCNHQRLVH LGDHSQASDS SILRSLNSKL SQKMSRRGKA EGLNDVSLEL TLA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-19	72	127	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-19	72	127	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	8e-20	72	127	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	8e-20	72	127	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	8e-20	72	127	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	8e-20	72	127	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-19	72	127	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-19	72	127	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-19	72	127	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-19	72	127	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-19	72	127	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-19	72	127	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX578495	5e-63	JX578495.1 Gossypium hirsutum clone NBRI_GE10535 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012451009.1	0.0	PREDICTED: uncharacterized protein LOC105773558 isoform X1
Refseq	XP_012451011.1	0.0	PREDICTED: probable transcription factor KAN4 isoform X3
Refseq	XP_012451012.1	0.0	PREDICTED: probable transcription factor KAN4 isoform X3
Refseq	XP_012451013.1	0.0	PREDICTED: probable transcription factor KAN4 isoform X3
TrEMBL	A0A0D2UGQ2	0.0	A0A0D2UGQ2_GOSRA; Uncharacterized protein
STRING	Gorai.010G181100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM363	28	184

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02060.1	1e-33	G2-like family protein

Link Out ? help Back to Top
Phytozome	Gorai.010G181100.1
Entrez Gene	105773558

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]