PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G161000.1
Common NameB456_010G161000, LOC105774266
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 277aa    MW: 30345.7 Da    PI: 4.9858
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G161000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY955.3e-3082140259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dpk++++tY+ eHnh+
  Gorai.010G161000.1  82 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRVDPKMLVVTYSYEHNHP 140
                         69*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-3174142IPR003657WRKY domain
PROSITE profilePS5081133.02976142IPR003657WRKY domain
SuperFamilySSF1182902.48E-2677142IPR003657WRKY domain
SMARTSM007741.4E-3681141IPR003657WRKY domain
PfamPF031065.2E-2683140IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MDAGDSNFNK AGNPFVSEQQ VEGNDNVSLE TGAESPPSST TFNDMKLPSP RKGRKPIQKR  60
VVSVPIKDVD SSRLKGESAP PSDSWAWRKY GQKPIKGSPY PRGYYRCSSS KGCPARKQVE  120
RSRVDPKMLV VTYSYEHNHP WPASRNNTAA AKQAVAAAEA ETPTMTTTAA VKPGPSTSQP  180
DTEPESGSEE KFADLTDDSI LKTRDEFGWL GEMETTSSTV LESQIFSERD NGEGDVGMVF  240
PMREEDELLF ADLGELPECS FVFRHQRKMG PQVGIC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B8e-2159142679Disease resistance protein RRS1
5w3x_D8e-2159142679Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0310880.0KF031088.1 Gossypium hirsutum WRKY transcription factor 43 (WRKY43) mRNA, complete cds.
GenBankKF6697920.0KF669792.1 Gossypium hirsutum WRKY transcription factor 85 (WRKY85) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012452156.10.0PREDICTED: probable WRKY transcription factor 65 isoform X1
SwissprotQ9LP562e-79WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBLA0A0D2R8T00.0A0A0D2R8T0_GOSRA; Uncharacterized protein
STRINGGorai.010G161000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53832849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.15e-80WRKY DNA-binding protein 65
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Singh V,Roy S,Singh D,Nandi AK
    Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes.
    J. Biosci., 2014. 39(1): p. 119-26
    [PMID:24499796]