PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G150700.1
Common NameB456_010G150700, LOC105773488
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 472aa    MW: 52348.3 Da    PI: 10.1541
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G150700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.45.7e-07536335
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgR 35
                         W t+E++ll  av ++G+++W+++a+++  +R
  Gorai.010G150700.1  5 TWGTWEELLLGGAVLRHGTRDWNLVASELR-TR 36
                        7****************************9.77 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001672.36E-4552No hitNo description
PfamPF002499.0E-6552IPR001005SANT/Myb domain
SMARTSM002971.1E-1384368IPR001487Bromodomain
SuperFamilySSF473706.28E-18262368IPR001487Bromodomain
Gene3DG3DSA:1.20.920.103.7E-15265369IPR001487Bromodomain
CDDcd043698.36E-16268363No hitNo description
PfamPF004392.3E-12273353IPR001487Bromodomain
PROSITE profilePS500149.849279349IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MITRTWGTWE ELLLGGAVLR HGTRDWNLVA SELRTRALSP FAFTPEACKA KYEDLQRRYS  60
GCKAWFEELR KQRMAELRRA LEESEDSIGS LESKLENLKA EKRNDSRVDY DSSPTESALP  120
CLKSEGFEFS SKDTCKDGLS AGSFTQEAQT NWAPDCQIPA AVPTEEMDSK PVGDALTSER  180
EIFSSIDKLA DALCGGKLLC IRKRRGKRKR KDCSKDTKEG SVGESEALCP ADVASALLCK  240
ETSVSNSGQI AKSSAVEDQS GGSTKEGIDD IMRIFSSVAE NDCASVFRRR LDSQKRGRYK  300
KMILRHMDFD TIRSRIVSNL IMSVRELFRD MLLVANNALV FYSKNTREYK SALHLRRIVT  360
TALWQHFKEY RGKVPMTTFT SNTPMHKPPA KPWSIHRGNR KPPGNASSNR NPVAGACHGS  420
KKTTAADSPA SDESLAVTKK VSASRPRKVS GGRTGQKSEA RTKGRKRSGG R*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203211RRGKRKRKD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012450899.10.0PREDICTED: uncharacterized protein LOC105773488 isoform X1
TrEMBLA0A0D2STB80.0A0A0D2STB8_GOSRA; Uncharacterized protein
STRINGGorai.010G150700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7607915
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42150.12e-34DNA-binding bromodomain-containing protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]