PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.010G147100.1

Common Name

B456_010G147100, LOC105774877

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 441aa MW: 48352.8 Da PI: 5.8414

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.010G147100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.8	1.2e-05	332	369	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L Gorai.010G147100.1 332 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 369 677888999*****998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.992	320	369	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.00E-5	330	373	No hit	No description
SuperFamily	SSF47459	1.44E-11	330	382	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.2E-9	334	377	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence Send to blast
MAEEFHAGIC RGTWWNSTKP MLTGCSLPPS TEVVDMGNLG YDTDMVDIRA RTRYYEESTK 60 NPVYGVSSTV FQGHPHHQAD SDSGVTSSSL LIDSTLQMMG FGLPSSTTSD WNLSLLRSNG 120 RTEFYNSILQ EDIDSRLNHR QETGMGSAQI LNYWSPKSHS GPGKDSSITV FEPIDQDISL 180 NSVTSSGNST PTCQGLSARF PMASSSYGYP STLLHSLFQS DPQTSEQQSL FNNRSINYMS 240 SAKSSWPKQQ PSSLRFSNNT PFWNASATGI NDVKTGFLPS PASQFLVQTF EEKANCPSST 300 TKTNSTEVGK SASGMKRPKL ESPSPLPTFK VRKEKLGDRI TALQQLVSPF GKTDTASVLH 360 EAIEYIKFLH DQVNVLSTPY MKQAVDSIQQ ENIDNLKDPD EPKQDLKSLG LCLVPISSTF 420 PVTNETTADI WTPTFGGTLR *

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence Send to blast

MAEEFHAGIC RGTWWNSTKP MLTGCSLPPS TEVVDMGNLG YDTDMVDIRA RTRYYEESTK  60
NPVYGVSSTV FQGHPHHQAD SDSGVTSSSL LIDSTLQMMG FGLPSSTTSD WNLSLLRSNG  120
RTEFYNSILQ EDIDSRLNHR QETGMGSAQI LNYWSPKSHS GPGKDSSITV FEPIDQDISL  180
NSVTSSGNST PTCQGLSARF PMASSSYGYP STLLHSLFQS DPQTSEQQSL FNNRSINYMS  240
SAKSSWPKQQ PSSLRFSNNT PFWNASATGI NDVKTGFLPS PASQFLVQTF EEKANCPSST  300
TKTNSTEVGK SASGMKRPKL ESPSPLPTFK VRKEKLGDRI TALQQLVSPF GKTDTASVLH  360
EAIEYIKFLH DQVNVLSTPY MKQAVDSIQQ ENIDNLKDPD EPKQDLKSLG LCLVPISSTF  420
PVTNETTADI WTPTFGGTLR *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF147230	8e-57	EF147230.1 Populus trichocarpa clone WS01229_K02 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012452898.1	0.0	PREDICTED: transcription factor bHLH103-like
TrEMBL	A0A0D2ST78	0.0	A0A0D2ST78_GOSRA; Uncharacterized protein
STRING	Gorai.010G147100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8062	26	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61660.1	8e-69	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.010G147100.1
Entrez Gene	105774877

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]