PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.010G132900.1

Common Name

B456_010G132900

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

M-type_MADS

Protein Properties

Length: 176aa MW: 20427.3 Da PI: 9.5173

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.010G132900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	58.5	8.6e-19	13	62	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 k ien r +tfskRr+gi KK +ELS+LC+ e++ iifs+ gk y +s Gorai.010G132900.1 13 KIIENADERLITFSKRRTGIYKKISELSTLCGGEILFIIFSPAGKPYSFS 62 579******************************************99998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	9.1E-25	5	64	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	22.413	5	65	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.2E-17	7	27	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.92E-23	8	81	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.3E-20	15	61	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.2E-17	27	42	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.2E-17	42	63	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
TRKLKESKKI EIKIIENADE RLITFSKRRT GIYKKISELS TLCGGEILFI IFSPAGKPYS 60 FSHPSDESVA KRFSNTSQYL EETTDAPVET YRKERINLLV QDFNDVQDQL DVIKVKQKEI 120 ALAKWSNGTK IRYWWKAPID QLNLRELYEQ DERFAEFNNL ITITRDKKNA AISSM*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016681297.1	1e-100	PREDICTED: agamous-like MADS-box protein AGL29
TrEMBL	A0A0D2UDS3	1e-124	A0A0D2UDS3_GOSRA; Uncharacterized protein (Fragment)
STRING	Gorai.010G132900.1	1e-125	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM86	28	390

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04100.1	1e-26	AGAMOUS-like 57

Link Out ? help Back to Top
Phytozome	Gorai.010G132900.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]