PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.010G132800.1

Common Name

B456_010G132800, LOC105771869

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

M-type_MADS

Protein Properties

Length: 201aa MW: 23010.2 Da PI: 9.7278

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.010G132800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	46.5	4.6e-15	17	65	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k ien+ r + +skRr+gi KK +ELS+L + ev+ iifs+ gk y + Gorai.010G132800.1 17 KIIENTDDRLIALSKRRTGIYKKISELSILSGGEVLFIIFSPGGKPYSF 65 579*****************************************98877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	20.997	9	69	IPR002100	Transcription factor, MADS-box
SMART	SM00432	6.4E-20	9	68	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.26E-21	10	85	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-13	11	31	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.4E-16	19	65	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-13	31	46	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-13	46	67	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MASSDKKTKG KQKIEIKIIE NTDDRLIALS KRRTGIYKKI SELSILSGGE VLFIIFSPGG 60 KPYSFGHPSV ESVAKRFSNA SQHLEETTDA PVETYRKERI NLLVQDFNDV QDQLNVIKEK 120 QKEISLAQRS HGTEIRHWWK SPIDQLNLKE LYEQDERFTE FNKLISITRN KKIATISSMQ 180 APMDEDVPSS FPPRYGRNLQ *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012448706.1	1e-146	PREDICTED: agamous-like MADS-box protein AGL62
TrEMBL	A0A0D2V9Q0	1e-145	A0A0D2V9Q0_GOSRA; Uncharacterized protein
STRING	Gorai.010G132800.1	1e-146	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM86	28	390

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04100.1	8e-26	AGAMOUS-like 57

Link Out ? help Back to Top
Phytozome	Gorai.010G132800.1
Entrez Gene	105771869

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]