PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.010G116000.1

Common Name

B456_010G116000

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

FAR1

Protein Properties

Length: 660aa MW: 76375.8 Da PI: 6.6553

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.010G116000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	75.7	9.7e-24	63	146	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fYn YAke GF +r+s+s +++++e +++++ Cs g++++++ + ++r+etrtgC a++++++ ++++w++ ++eleHnH++ Gorai.010G116000.1 63 DFYNIYAKEQGFGIRVSNSWFRTKKKERYRAKLSCSSAGFKKKSEAN-----NPRPETRTGCPAMVVIRLVDSKRWRIVEVELEHNHQV 146 6***************************************99888.....9********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-21	63	146	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	9.3E-29	258	350	IPR018289	MULE transposase domain
Pfam	PF04434	1.5E-4	544	577	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	9.532	544	580	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.6E-6	555	582	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 660 aa Download sequence Send to blast
MEEVCLNSEP VFDMVDEYEG DGEGEGDCSA VEHDDETGSK HSKKEPPLPT IGLEFDSFDE 60 AYDFYNIYAK EQGFGIRVSN SWFRTKKKER YRAKLSCSSA GFKKKSEANN PRPETRTGCP 120 AMVVIRLVDS KRWRIVEVEL EHNHQVKMIL AARKARPPAE PVTEIHTIKL YRTAAMDAVS 180 NGFSNVSERE GIHQPDHSKH LELKEGDAYA VYNFFCRMKL TNPNFFYLMD FDDDGPLKNV 240 FWADARSRAA YGYFSDTVAI DTTCLTNKYE LPLISFVGVN HHGQSVLLGC GFLGHKSVEY 300 FVWIFRAWLK CMLGHQPQVI VTDQCKSLQI AVSEVFPKAR HCFCLWYIMQ RVPEKLGGLR 360 GFEEIKRQLN KAVYNSLKII EFETSWTEMI KKHGLGDNKW LQTLYEERKQ WVPVYLKDTF 420 FAGMIPIREN ESLNAFFDGY VHKHTSFKEF VDKYDLALYR KHLKEATADV QSKNSSFELK 480 TRCNFEVQLS KAYTKEIFDK FQSEVEGMYS CFNTRQVTAN GPIITYIVKE RVEIEGNEKE 540 VRSYEVLFET NQVDIRCICS LFNYKGYLCR HALNVLNYNG VEEVPSRYIL RRWCKDFKFQ 600 HVDLGSTDID VYGPVYRRSH FHNCAVPIVE GGAQSEEQYK IALHELQELL NKFNLVDDS*

Sequence ? help Back to Top

Protein Sequence Length: 660 aa Download sequence Send to blast

MEEVCLNSEP VFDMVDEYEG DGEGEGDCSA VEHDDETGSK HSKKEPPLPT IGLEFDSFDE  60
AYDFYNIYAK EQGFGIRVSN SWFRTKKKER YRAKLSCSSA GFKKKSEANN PRPETRTGCP  120
AMVVIRLVDS KRWRIVEVEL EHNHQVKMIL AARKARPPAE PVTEIHTIKL YRTAAMDAVS  180
NGFSNVSERE GIHQPDHSKH LELKEGDAYA VYNFFCRMKL TNPNFFYLMD FDDDGPLKNV  240
FWADARSRAA YGYFSDTVAI DTTCLTNKYE LPLISFVGVN HHGQSVLLGC GFLGHKSVEY  300
FVWIFRAWLK CMLGHQPQVI VTDQCKSLQI AVSEVFPKAR HCFCLWYIMQ RVPEKLGGLR  360
GFEEIKRQLN KAVYNSLKII EFETSWTEMI KKHGLGDNKW LQTLYEERKQ WVPVYLKDTF  420
FAGMIPIREN ESLNAFFDGY VHKHTSFKEF VDKYDLALYR KHLKEATADV QSKNSSFELK  480
TRCNFEVQLS KAYTKEIFDK FQSEVEGMYS CFNTRQVTAN GPIITYIVKE RVEIEGNEKE  540
VRSYEVLFET NQVDIRCICS LFNYKGYLCR HALNVLNYNG VEEVPSRYIL RRWCKDFKFQ  600
HVDLGSTDID VYGPVYRRSH FHNCAVPIVE GGAQSEEQYK IALHELQELL NKFNLVDDS*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016754975.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6-like
Refseq	XP_016754976.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6-like
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A0D2UAE9	0.0	A0A0D2UAE9_GOSRA; Uncharacterized protein
STRING	Gorai.010G116000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Link Out ? help Back to Top
Phytozome	Gorai.010G116000.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]