PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.010G101100.1

Common Name

B456_010G101100, LOC105774612

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GATA

Protein Properties

Length: 277aa MW: 30252.9 Da PI: 9.8741

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.010G101100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	59.6	4.1e-19	140	173	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs C+tt+TplWR+gp+g+k+LCnaCG+++rk + Gorai.010G101100.1 140 CSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKAR 173 *******************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00401	2.5E-20	134	185	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	13.02	134	170	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	5.7E-13	135	174	No hit	No description
Gene3D	G3DSA:3.30.50.10	8.9E-16	138	174	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	7.27E-15	139	171	No hit	No description
Pfam	PF00320	6.7E-17	140	173	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	140	165	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MTPAFLNPPP SPNFPFVELK EEPHHLQLFL SVDKYEGGSS ASDQQASSSS SSSSLQSTVE 60 DQKATNGQNS SFGRNEERNY ESSAGDNKNG ITVKWMSSKI RLMKKMMNSN SNCSSSRRST 120 DHKFQYPVTG NGEANAIRVC SDCNTTTTPL WRSGPRGPKS LCNACGIRQR KARRAMEAAT 180 AAAENGAGVA TDAAIVMKFK VNNKEKKSRI GQFKKQQFKA QSDYNSPYSQ QSQKKLCFKE 240 LALSLSKNSA LQSVFPRDVE DAAILLMELS CGLIHS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF148510	2e-31	EF148510.1 Populus trichocarpa x Populus deltoides clone WS0131_P03 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012452612.1	0.0	PREDICTED: putative GATA transcription factor 22
TrEMBL	A0A0D2R5E8	0.0	A0A0D2R5E8_GOSRA; Uncharacterized protein
STRING	Gorai.010G101100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16433	7	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G26150.1	4e-22	cytokinin-responsive gata factor 1

Link Out ? help Back to Top
Phytozome	Gorai.010G101100.1
Entrez Gene	105774612

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]