PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G056100.1
Common NameB456_010G056100, LOC105773921
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 291aa    MW: 32793 Da    PI: 6.6791
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G056100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.21.6e-092412742154
                         HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         k +yp++e++++LA+k+gL+ +q+ +WF N+R +
  Gorai.010G056100.1 241 KWPYPTEEDKARLAQKTGLQLKQINNWFINQRKR 274
                         469*****************************87 PP
2ELK30.96.1e-11195216122
                 ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                         ELKh+L+++Y+++++++++E++
  Gorai.010G056100.1 195 ELKHELKQGYKEKIVDVREEIL 216
                         9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012559.7E-183175IPR005540KNOX1
PfamPF037901.7E-163373IPR005540KNOX1
SMARTSM012561.4E-2182138IPR005541KNOX2
PfamPF037912.3E-1489137IPR005541KNOX2
SMARTSM011888.9E-4195216IPR005539ELK domain
PROSITE profilePS512139.83195215IPR005539ELK domain
PfamPF037893.6E-7195216IPR005539ELK domain
PROSITE profilePS5007112.001215278IPR001356Homeobox domain
SuperFamilySSF466894.71E-17217280IPR009057Homeodomain-like
SMARTSM003892.1E-11217282IPR001356Homeobox domain
CDDcd000864.86E-13218278No hitNo description
Gene3DG3DSA:1.10.10.602.7E-25222279IPR009057Homeodomain-like
PfamPF059208.3E-18235274IPR008422Homeobox KN domain
PROSITE patternPS000270253276IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MAFDGFVSHH SEHMQTLAFN QPSSPPNFDP AKCKAEIIGH PMYPQLLEGH VACLRVATPV  60
DQLPKIDAQL ARSQDVSAKY SSSPAAGAAH HELDHFMANY VLLLGFFKDQ LQQHVRVHAM  120
EAVMSCWDLE QSLQSLTGVS PGEGTGATMS DDEDEVVDND HSLFDGSFDG IDSMGFGPLV  180
PSETERSLME HVRQELKHEL KQGYKEKIVD VREEILRKRR AGKLPGDTTL ILKAWWQSHS  240
KWPYPTEEDK ARLAQKTGLQ LKQINNWFIN QRKRNWHNTP STSLKSKREK *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5775561e-133JX577556.1 Gossypium hirsutum clone NBRI_GE9405 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012451579.10.0PREDICTED: homeobox protein knotted-1-like 3 isoform X1
SwissprotP480011e-147KNAT4_ARATH; Homeobox protein knotted-1-like 4
TrEMBLA0A0D2U6X20.0A0A0D2U6X2_GOSRA; Uncharacterized protein
STRINGGorai.010G056100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11060.11e-149KNOTTED1-like homeobox gene 4
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]