PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.010G045700.7 | ||||||||
Common Name | B456_010G045700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bZIP | ||||||||
Protein Properties | Length: 251aa MW: 28574.2 Da PI: 8.7555 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 36 | 1.5e-11 | 73 | 113 | 3 | 40 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLea 40 +k +rr+++NReAAr+sR+RKka++++Le k ++Le+ Gorai.010G045700.7 73 TDKIQRRLAQNREAARKSRLRKKAYVQQLESsrlKLAQLEQ 113 7899**************************83333444444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.5E-7 | 71 | 134 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.163 | 73 | 117 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 5.8E-8 | 73 | 111 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14708 | 2.15E-22 | 75 | 127 | No hit | No description |
SuperFamily | SSF57959 | 2.88E-7 | 75 | 116 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 5.7E-8 | 76 | 118 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 78 | 93 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 3.1E-28 | 161 | 233 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MSSLSTELTR RKAMYEQLHQ INKWGDTFNG EDSPKTGSST VLQVDVRLEN KAEYISSEKT 60 EPSRSDQGTN KPTDKIQRRL AQNREAARKS RLRKKAYVQQ LESSRLKLAQ LEQELERARQ 120 QGLYISSAST GYFGLSAAAN AGITAFEMEY GNWVEEQNKK ICELRSALQA HITDIELRIL 180 VENSLNHYCN LFHIKADAAK ADVFYLISGI WRTTAERFFH WIGGFRPSEL LNVTHFSINY 240 AIHPSISEHC * |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in roots. {ECO:0000269|PubMed:8628224}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00247 | DAP | Transfer from AT1G77920 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012451949.1 | 1e-173 | PREDICTED: transcription factor TGA7-like | ||||
Refseq | XP_012451950.1 | 1e-173 | PREDICTED: transcription factor TGA7-like | ||||
Refseq | XP_012451951.1 | 1e-173 | PREDICTED: transcription factor TGA7-like | ||||
Swissprot | Q39237 | 4e-89 | TGA1_ARATH; Transcription factor TGA1 | ||||
TrEMBL | A0A0D2U8F3 | 0.0 | A0A0D2U8F3_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.010G045700.1 | 1e-172 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77920.1 | 8e-79 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.010G045700.7 |