PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G045700.3
Common NameB456_010G045700, LOC105774129
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 358aa    MW: 40477.6 Da    PI: 8.9175
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G045700.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.32.6e-1173113340
                         XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHH CS
              bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLea 40 
                          +k +rr+++NReAAr+sR+RKka++++Le    k ++Le+
  Gorai.010G045700.3  73 TDKIQRRLAQNREAARKSRLRKKAYVQQLESsrlKLAQLEQ 113
                         7899**************************83333444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.0E-866119No hitNo description
SMARTSM003381.5E-771134IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.16373117IPR004827Basic-leucine zipper domain
PfamPF001709.8E-873111IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.63E-775116No hitNo description
PROSITE patternPS0003607893IPR004827Basic-leucine zipper domain
PfamPF141447.0E-29161236IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MSSLSTELTR RKAMYEQLHQ INKWGDTFNG EDSPKTGSST VLQVDVRLEN KAEYISSEKT  60
EPSRSDQGTN KPTDKIQRRL AQNREAARKS RLRKKAYVQQ LESSRLKLAQ LEQELERARQ  120
QGLYISSAST GYFGLSAAAN AGITAFEMEY GNWVEEQNKK ICELRSALQA HITDIELRIL  180
VENSLNHYCN LFHIKADAAK ADVFYLISGI WRTTAERFFH WIGGFRPSEL LNVVMSQIEP  240
LTDQQQLEVY NLQQSSLQAE DALSQGIDRL QQNLAESVAT DLSSGNYRAQ LAAAIDKLQA  300
LEGFVKQADH LRQQTLQQMA RILTTRQAAR GLLALGEYFH RLRALSSLWS ARPREPA*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269|PubMed:12953119}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00247DAPTransfer from AT1G77920Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012451949.10.0PREDICTED: transcription factor TGA7-like
RefseqXP_012451950.10.0PREDICTED: transcription factor TGA7-like
RefseqXP_012451951.10.0PREDICTED: transcription factor TGA7-like
SwissprotQ93ZE21e-160TGA7_ARATH; Transcription factor TGA7
TrEMBLA0A0D2SM450.0A0A0D2SM45_GOSRA; Uncharacterized protein
STRINGGorai.010G045700.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77920.11e-150bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]