PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.010G037800.2

Common Name

B456_010G037800, LOC105774400

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HD-ZIP

Protein Properties

Length: 257aa MW: 29616.2 Da PI: 5.0692

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.010G037800.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.5	5.4e-19	57	110	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ +q+++Le+ F +++ e++ +LA++lgL+ rqV +WFqNrRa++k Gorai.010G037800.2 57 KKRRLSMHQVKALEKNFDVGNKLEPERKVKLAEELGLQPRQVAIWFQNRRARWK 110 56689************************************************9 PP
2	HD-ZIP_I/II	126	1.7e-40	56	148	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrls +qvk+LE++F+ +kLeperKv+la+eLglqprqva+WFqnrRAR+ktk lEkdy++Lk++ydalk ++++Leke+ L ++l Gorai.010G037800.2 56 EKKRRLSMHQVKALEKNFDVGNKLEPERKVKLAEELGLQPRQVAIWFQNRRARWKTKVLEKDYAMLKANYDALKLDHDNLEKEKLGLIAKL 146 69***********************************************************************************999998 PP HD-ZIP_I/II 92 ke 93 ++ Gorai.010G037800.2 147 RD 148 75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.07E-18	44	112	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.475	52	112	IPR001356	Homeobox domain
SMART	SM00389	4.6E-18	55	116	IPR001356	Homeobox domain
CDD	cd00086	3.50E-15	57	112	No hit	No description
Pfam	PF00046	3.1E-16	57	110	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.9E-19	64	111	IPR009057	Homeodomain-like
PRINTS	PR00031	6.7E-6	83	92	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	87	110	IPR017970	Homeobox, conserved site
PRINTS	PR00031	6.7E-6	92	108	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.2E-12	112	153	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MKRLSPSPSL DAFMSISQPK EEKRSKKHQI YSKEFQAMLD GLDEEDSLEE GGQATEKKRR 60 LSMHQVKALE KNFDVGNKLE PERKVKLAEE LGLQPRQVAI WFQNRRARWK TKVLEKDYAM 120 LKANYDALKL DHDNLEKEKL GLIAKLRDLK SKLKEECPSF SVRNKEQGCC ENDDDDDCNG 180 IVKEESNVMN GSSSSSDSSN NHKWFKPFES RMDMGYTYDE PELVELEERS MFSAEESCGF 240 FSVDQAPSLQ WYFTGQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC243121	1e-162	AC243121.1 Gossypium raimondii clone GR__Ba0142D21-hnv, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012452342.1	0.0	PREDICTED: homeobox-leucine zipper protein ATHB-6-like isoform X2
TrEMBL	A0A0D2U8H7	0.0	A0A0D2U8H7_GOSRA; Uncharacterized protein
STRING	Gorai.010G037800.1	1e-177	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65310.2	9e-45	homeobox protein 5

Link Out ? help Back to Top
Phytozome	Gorai.010G037800.2
Entrez Gene	105774400

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]