PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G037800.1
Common NameB456_010G037800, LOC105774400
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 261aa    MW: 30064.7 Da    PI: 4.9754
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G037800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.55.5e-1961114356
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         k+++++ +q+++Le+ F   +++  e++ +LA++lgL+ rqV +WFqNrRa++k
  Gorai.010G037800.1  61 KKRRLSMHQVKALEKNFDVGNKLEPERKVKLAEELGLQPRQVAIWFQNRRARWK 114
                         56689************************************************9 PP
2HD-ZIP_I/II1261.7e-4060152193
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         ekkrrls +qvk+LE++F+  +kLeperKv+la+eLglqprqva+WFqnrRAR+ktk lEkdy++Lk++ydalk ++++Leke+  L ++l
  Gorai.010G037800.1  60 EKKRRLSMHQVKALEKNFDVGNKLEPERKVKLAEELGLQPRQVAIWFQNRRARWKTKVLEKDYAMLKANYDALKLDHDNLEKEKLGLIAKL 150
                         69***********************************************************************************999998 PP

         HD-ZIP_I/II  92 ke 93 
                         ++
  Gorai.010G037800.1 151 RD 152
                         75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.03E-1848116IPR009057Homeodomain-like
PROSITE profilePS5007117.47556116IPR001356Homeobox domain
SMARTSM003894.6E-1859120IPR001356Homeobox domain
CDDcd000862.48E-1561116No hitNo description
PfamPF000463.2E-1661114IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.0E-1968115IPR009057Homeodomain-like
PRINTSPR000316.8E-68796IPR000047Helix-turn-helix motif
PROSITE patternPS00027091114IPR017970Homeobox, conserved site
PRINTSPR000316.8E-696112IPR000047Helix-turn-helix motif
PfamPF021831.3E-12116157IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MKRLSPSPSL DAFMSISQPK VDYAEEKRSK KHQIYSKEFQ AMLDGLDEED SLEEGGQATE  60
KKRRLSMHQV KALEKNFDVG NKLEPERKVK LAEELGLQPR QVAIWFQNRR ARWKTKVLEK  120
DYAMLKANYD ALKLDHDNLE KEKLGLIAKL RDLKSKLKEE CPSFSVRNKE QGCCENDDDD  180
DCNGIVKEES NVMNGSSSSS DSSNNHKWFK PFESRMDMGY TYDEPELVEL EERSMFSAEE  240
SCGFFSVDQA PSLQWYFTGQ *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2431211e-170AC243121.1 Gossypium raimondii clone GR__Ba0142D21-hnv, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012452341.10.0PREDICTED: homeobox-leucine zipper protein ATHB-6-like isoform X1
TrEMBLA0A0D2R1L80.0A0A0D2R1L8_GOSRA; Uncharacterized protein
STRINGGorai.010G037800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54528143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65310.22e-44homeobox protein 5
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]