PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G021900.1
Common NameB456_010G021900, LOC105774454
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 207aa    MW: 23456.8 Da    PI: 10.1543
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G021900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.41.5e-1780129255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          y+G+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  Gorai.010G021900.1  80 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYTTPVAAARAYDIAVFYLRG 129
                         69*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.20780137IPR001471AP2/ERF domain
SMARTSM003804.3E-3680143IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-2180138IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-2981138IPR001471AP2/ERF domain
PRINTSPR003671.3E-118192IPR001471AP2/ERF domain
PfamPF008472.1E-1081129IPR001471AP2/ERF domain
CDDcd000183.06E-2781139No hitNo description
PRINTSPR003671.3E-11119139IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MSAKFVFKYI RSTWRPCPDD KLAAKWETIL QFISPPTLCL WFWFFGRVPA MEGDCCSSST  60
SSSTSGEKPK AERTQQKEKP YRGIRMRKWG KWVAEIREPN KRSRIWLGSY TTPVAAARAY  120
DIAVFYLRGP SARLNFPDLI EKDNKLRDIS ATSIRKKAAE VGAKVDALQT SSVYHHGGSS  180
SDSPNNTRRV LLKPDLNKYP EISDED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-1577137263ATERF1
3gcc_A4e-1577137263ATERF1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at low levels in flowers, leaves, and stems, and at very low levels in roots. {ECO:0000269|PubMed:9192694}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00188DAPTransfer from AT1G46768Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5893125e-56JX589312.1 Gossypium hirsutum clone NBRI_GE23985 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012452408.11e-152PREDICTED: ethylene-responsive transcription factor RAP2-1-like isoform X1
SwissprotQ8LC308e-48RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1
TrEMBLA0A0D2R0P21e-151A0A0D2R0P2_GOSRA; Uncharacterized protein
STRINGGorai.010G021900.11e-152(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46768.18e-50related to AP2 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]