PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G008000.1
Common NameB456_010G008000
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 193aa    MW: 22182.9 Da    PI: 6.6835
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G008000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_142.51.4e-1353111563
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         ++ +r+++NRe+ArrsR RK++ ++eL   v +L + N +   +++  ++++ ++++e+
  Gorai.010G008000.1  53 RKRKRMESNRESARRSRMRKQKHLDELMAQVTQLVKDNNQILTTINFTTQHYINMEAEN 111
                         6789*****************************************99999999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.8E-104598No hitNo description
SMARTSM003386.1E-1946113IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.26651114IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.88E-1253107No hitNo description
PfamPF001704.9E-1153111IPR004827Basic-leucine zipper domain
CDDcd147025.62E-1954104No hitNo description
PROSITE patternPS0003605671IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MSPVVSEILR SGFMINSSLR RRTHLVQSFS VVFLYCGNSM SNSGSEEDLH NQRKRKRMES  60
NRESARRSRM RKQKHLDELM AQVTQLVKDN NQILTTINFT TQHYINMEAE NSVLRAQMME  120
LSQRLESLNE ILNYLNSGTN SNNSNDGFET SEGFETTSDE SFTTIISNHN NNPFVIMNQP  180
IMASSDMMMF QY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15273RKRKRMESNRESARRSRMRKQK
26572RRSRMRKQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the micropylar endosperm and radicle tip in early germinating seeds. {ECO:0000269|PubMed:23461773}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012449215.11e-110PREDICTED: ocs element-binding factor 1-like
SwissprotC0Z2L59e-42BZP44_ARATH; bZIP transcription factor 44
TrEMBLA0A0D2U3U91e-137A0A0D2U3U9_GOSRA; Uncharacterized protein
STRINGGorai.010G008000.11e-138(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50128154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.14e-41basic leucine-zipper 44
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  3. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]