PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.010G006800.1

Common Name

B456_010G006800, LOC105774344

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

SRS

Protein Properties

Length: 306aa MW: 33726.5 Da PI: 8.1359

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.010G006800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	225.7	8.9e-70	84	240	2	154
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel....kskkqsalss 88 r+g+++CqdCGnqakkdC h RCRtCCksrgf+C+thvkstWvpaakrrerqqqla+++++++ + + +kr++e+ ++ +l++ Gorai.010G006800.1 84 RQGGINCQDCGNQAKKDCLHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLATLQEQQQF--RGEIPKRQKENqgggVVTAVPSLAC 172 67999*************************************************99777655..5666666666645666777788888 PP DUF702 89 tklssaesk..keletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 t+ls +++ + le ++P+evss+avfrcv+vs++dd +ee+aYqtav+i+GhvfkGiLydqG+e+ Gorai.010G006800.1 173 TRLSPTTTAttSGLELGQFPPEVSSQAVFRCVKVSAMDDVDEEFAYQTAVNIAGHVFKGILYDQGPES 240 888766554015567778**********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	4.2E-65	87	239	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.6E-27	89	131	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	3.5E-26	190	238	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MAGFFYLTGN KQEDKEESLH LYRNEEIYNS NNRGFEIWPQ YYYQQPQQAN VVSSSTYPFG 60 TGPSRRTIAG GFNLSDESSS SRLRQGGINC QDCGNQAKKD CLHLRCRTCC KSRGFQCQTH 120 VKSTWVPAAK RRERQQQLAT LQEQQQFRGE IPKRQKENQG GGVVTAVPSL ACTRLSPTTT 180 ATTSGLELGQ FPPEVSSQAV FRCVKVSAMD DVDEEFAYQT AVNIAGHVFK GILYDQGPES 240 RYTGGGGGSR ENSQQQQQLN LMADMTTTAV ATSSNIGTNM LDPSVYPAPI NAFIAGTQFF 300 PHPRS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX583895	1e-127	JX583895.1 Gossypium hirsutum clone NBRI_GE17047 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012452264.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 7-like
Swissprot	Q9LQZ5	4e-85	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBL	A0A0D2SKH4	0.0	A0A0D2SKH4_GOSRA; Uncharacterized protein
STRING	Gorai.010G006800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2645	25	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	4e-75	SHI-related sequence 5

Link Out ? help Back to Top
Phytozome	Gorai.010G006800.1
Entrez Gene	105774344

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]