PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.010G006600.3

Common Name

B456_010G006600

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

DBB

Protein Properties

Length: 202aa MW: 22109.9 Da PI: 5.5417

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.010G006600.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	23.4	1.2e-07	4	43	5	38
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ + ++e++ fC+ ++ lC+ C H+ H+ Gorai.010G006600.3 4 QCDVCYKEEATVFCTADEAALCDACDHRVHHAnklaskHQ 43 7***************************964446666665 PP
2	zf-B_box	18.6	3.8e-06	56	81	2	27
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCe 27 + + C+ ++ek++ lfC++++ lC Gorai.010G006600.3 56 QVPLCDICQEKRAFLFCQQDRAILCV 81 6789*********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.907	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	3.92E-6	3	47	No hit	No description
SMART	SM00336	4.9E-7	4	47	IPR000315	B-box-type zinc finger
Pfam	PF00643	6.3E-6	4	43	IPR000315	B-box-type zinc finger
SMART	SM00336	0.96	55	89	IPR000315	B-box-type zinc finger
CDD	cd00021	2.48E-5	58	81	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MKIQCDVCYK EEATVFCTAD EAALCDACDH RVHHANKLAS KHQRFTLLHP CSSSKQVPLC 60 DICQEKRAFL FCQQDRAILC VKLSSRSATY NTTSSSSNGG DSVPEFKVNN PISSISPPDF 120 NPSSNEVDGS TSSISEYLIE MLPGWHVEDL LDSSPSLSPI GFCKNDDGML PFSDPSQSLY 180 HLPQMEGPIG LKETTMKGNK R*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269\|PubMed:17965270, ECO:0000269\|PubMed:21070414}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012448517.1	1e-142	PREDICTED: B-box zinc finger protein 21-like, partial
Swissprot	Q9LQZ7	1e-58	BBX21_ARATH; B-box zinc finger protein 21
TrEMBL	A0A0D2U3T5	1e-148	A0A0D2U3T5_GOSRA; Uncharacterized protein (Fragment)
STRING	Gorai.010G006600.1	1e-142	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75540.1	6e-52	salt tolerance homolog2

Link Out ? help Back to Top
Phytozome	Gorai.010G006600.3

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Xu D, et al. BBX21, an Arabidopsis B-box protein, directly activates HY5 and is targeted by COP1 for 26S proteasome-mediated degradation. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(27): p. 7655-60 [PMID:27325768] Xu DB, et al. The G-Protein β Subunit AGB1 Promotes Hypocotyl Elongation through Inhibiting Transcription Activation Function of BBX21 in Arabidopsis. Mol Plant, 2017. 10(9): p. 1206-1223 [PMID:28827171] Xu D,Jiang Y,Li J,Holm M,Deng XW The B-Box Domain Protein BBX21 Promotes Photomorphogenesis. Plant Physiol., 2018. 176(3): p. 2365-2375 [PMID:29259103] Job N,Yadukrishnan P,Bursch K,Datta S,Johansson H Two B-Box Proteins Regulate Photomorphogenesis by Oppositely Modulating HY5 through their Diverse C-Terminal Domains. Plant Physiol., 2018. 176(4): p. 2963-2976 [PMID:29439209] Crocco CD,Ocampo GG,Ploschuk EL,Mantese A,Botto JF Heterologous Expression of AtBBX21 Enhances the Rate of Photosynthesis and Alleviates Photoinhibition in Solanumtuberosum. Plant Physiol., 2018. 177(1): p. 369-380 [PMID:29555784] Kang X, et al. HRB2 and BBX21 interaction modulates Arabidopsis ABI5 locus and stomatal aperture. Plant Cell Environ., 2018. 41(8): p. 1912-1925 [PMID:29748960]