PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G421200.7
Common NameB456_009G421200
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 352aa    MW: 38262.6 Da    PI: 9.371
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G421200.7genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.82.2e-33194250360
                         -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                         DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  d+++ ei+Y+geHnh+k
  Gorai.009G421200.7 194 DGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSL-DGQIAEIVYKGEHNHPK 250
                         9***************************************.***************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-30184251IPR003657WRKY domain
SuperFamilySSF1182901.44E-26190251IPR003657WRKY domain
SMARTSM007741.3E-37192250IPR003657WRKY domain
PROSITE profilePS5081124.076194251IPR003657WRKY domain
PfamPF031064.4E-26194249IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010214Biological Processseed coat development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MEVKEAERIV IAKPVASRPT CSSFKSFSEL LAGAINAAPP NACSANIVPA IRPKTVRFKP  60
VVNRAPSAMV SSQAEQSRIG ISISSDKVSK SDVKPTVVYK PQAKLVSKTT VSLLANMGNF  120
SASNQQRLQS MEAPVEYANW EKMRAQVRPN HHQNAPSQAE TDQTSEPSKV GSQNMEEDPK  180
VLPAVANSDR PSYDGYNWRK YGQKQVKGSE YPRSYYKCTH PNCPVKKKVE RSLDGQIAEI  240
VYKGEHNHPK PQPPKRNSSQ GLGVTSDGTG QDANNSLWSN NHNERNEGSE TRAENHSEVG  300
LSVLPAYQVK ALAPYEHVTT GGTSENSAGL SGECEEASKE GADVESKSKR R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-181942511674WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6698520.0KF669852.1 Gossypium hirsutum WRKY transcription factor 97 (WRKY97) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012443399.10.0PREDICTED: WRKY transcription factor 44
RefseqXP_012443400.10.0PREDICTED: WRKY transcription factor 44
TrEMBLA0A0D2SHC40.0A0A0D2SHC4_GOSRA; Uncharacterized protein
STRINGGorai.009G421200.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.13e-70WRKY family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]